Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4644 and Pf1N1B4_4645 are separated by 245 nucleotides Pf1N1B4_4645 and Pf1N1B4_4646 are separated by 123 nucleotides Pf1N1B4_4646 and Pf1N1B4_4647 are separated by 205 nucleotides Pf1N1B4_4647 and Pf1N1B4_4648 are separated by 228 nucleotides
Pf1N1B4_4644 - hypothetical protein, at 5,124,245 to 5,124,505
_4644
Pf1N1B4_4645 - FIG00954888: hypothetical protein, at 5,124,751 to 5,125,044
_4645
Pf1N1B4_4646 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,125,168 to 5,126,601
_4646
Pf1N1B4_4647 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 5,126,807 to 5,127,247
_4647
Pf1N1B4_4648 - transcriptional regulator, MerR family, at 5,127,476 to 5,128,453
_4648
Position (kb)
5125
5126
5127 Strain fitness (log2 ratio)
-2
-1
0
1 at 5124.210 kb on + strand at 5124.211 kb on - strand at 5124.217 kb on - strand at 5124.232 kb on - strand at 5124.247 kb on - strand at 5124.285 kb on + strand at 5124.285 kb on + strand, within Pf1N1B4_4644 at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand at 5124.545 kb on + strand at 5124.545 kb on + strand at 5124.546 kb on - strand at 5124.611 kb on + strand at 5124.611 kb on + strand at 5124.924 kb on - strand, within Pf1N1B4_4645 at 5124.924 kb on - strand, within Pf1N1B4_4645 at 5124.924 kb on - strand, within Pf1N1B4_4645 at 5125.148 kb on + strand at 5125.299 kb on - strand at 5125.549 kb on - strand, within Pf1N1B4_4646 at 5125.636 kb on + strand, within Pf1N1B4_4646 at 5125.636 kb on + strand, within Pf1N1B4_4646 at 5125.637 kb on - strand at 5125.873 kb on - strand, within Pf1N1B4_4646 at 5126.263 kb on + strand, within Pf1N1B4_4646 at 5126.378 kb on + strand, within Pf1N1B4_4646 at 5126.432 kb on + strand, within Pf1N1B4_4646 at 5126.433 kb on - strand, within Pf1N1B4_4646 at 5126.562 kb on + strand at 5126.769 kb on + strand at 5126.785 kb on - strand at 5126.826 kb on - strand at 5127.246 kb on - strand at 5127.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,124,210 + +0.8 5,124,211 - -0.1 5,124,217 - -0.1 5,124,232 - -0.8 5,124,247 - +0.5 5,124,285 + -0.1 5,124,285 + Pf1N1B4_4644 0.15 +0.1 5,124,286 - Pf1N1B4_4644 0.16 +0.0 5,124,286 - +0.5 5,124,286 - Pf1N1B4_4644 0.16 -0.3 5,124,286 - +1.0 5,124,286 - Pf1N1B4_4644 0.16 +0.1 5,124,286 - Pf1N1B4_4644 0.16 +1.3 5,124,286 - -0.1 5,124,286 - Pf1N1B4_4644 0.16 -2.1 5,124,286 - Pf1N1B4_4644 0.16 -0.1 5,124,286 - -0.5 5,124,545 + +0.5 5,124,545 + -0.5 5,124,546 - +1.3 5,124,611 + +0.0 5,124,611 + -1.5 5,124,924 - Pf1N1B4_4645 0.59 +0.2 5,124,924 - Pf1N1B4_4645 0.59 -0.9 5,124,924 - Pf1N1B4_4645 0.59 +0.8 5,125,148 + -0.0 5,125,299 - -0.2 5,125,549 - Pf1N1B4_4646 0.27 +0.3 5,125,636 + Pf1N1B4_4646 0.33 -0.3 5,125,636 + Pf1N1B4_4646 0.33 +1.3 5,125,637 - -0.9 5,125,873 - Pf1N1B4_4646 0.49 -0.1 5,126,263 + Pf1N1B4_4646 0.76 +0.7 5,126,378 + Pf1N1B4_4646 0.84 +0.2 5,126,432 + Pf1N1B4_4646 0.88 -0.0 5,126,433 - Pf1N1B4_4646 0.88 -0.5 5,126,562 + +0.5 5,126,769 + -1.9 5,126,785 - -0.0 5,126,826 - -1.5 5,127,246 - -2.3 5,127,550 - +0.2
Or see this region's nucleotide sequence