Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4632

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4629 and Pf1N1B4_4630 overlap by 4 nucleotidesPf1N1B4_4630 and Pf1N1B4_4631 are separated by 118 nucleotidesPf1N1B4_4631 and Pf1N1B4_4632 are separated by 108 nucleotidesPf1N1B4_4632 and Pf1N1B4_4633 overlap by 4 nucleotides Pf1N1B4_4629 - hypothetical protein, at 5,104,642 to 5,104,854 _4629 Pf1N1B4_4630 - hypothetical protein, at 5,104,851 to 5,105,108 _4630 Pf1N1B4_4631 - Glutathione S-transferase family protein, at 5,105,227 to 5,105,703 _4631 Pf1N1B4_4632 - Exonuclease SbcC, at 5,105,812 to 5,109,453 _4632 Pf1N1B4_4633 - Exonuclease SbcD, at 5,109,450 to 5,110,706 _4633 Position (kb) 5105 5106 5107 5108 5109 5110Strain fitness (log2 ratio) -2 -1 0 1 2at 5105.170 kb on - strandat 5105.170 kb on - strandat 5105.170 kb on - strandat 5105.170 kb on - strandat 5105.170 kb on - strandat 5105.170 kb on - strandat 5105.173 kb on + strandat 5105.240 kb on - strandat 5105.297 kb on + strand, within Pf1N1B4_4631at 5105.298 kb on - strand, within Pf1N1B4_4631at 5105.493 kb on - strand, within Pf1N1B4_4631at 5106.237 kb on - strand, within Pf1N1B4_4632at 5106.237 kb on - strand, within Pf1N1B4_4632at 5106.968 kb on + strand, within Pf1N1B4_4632at 5107.982 kb on + strand, within Pf1N1B4_4632at 5108.864 kb on + strand, within Pf1N1B4_4632at 5108.864 kb on + strand, within Pf1N1B4_4632at 5108.865 kb on - strand, within Pf1N1B4_4632at 5109.173 kb on + strandat 5109.474 kb on + strandat 5109.474 kb on + strandat 5109.533 kb on - strandat 5110.028 kb on - strand, within Pf1N1B4_4633at 5110.222 kb on + strand, within Pf1N1B4_4633at 5110.222 kb on + strand, within Pf1N1B4_4633at 5110.223 kb on - strand, within Pf1N1B4_4633at 5110.227 kb on - strand, within Pf1N1B4_4633

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,105,170 - +2.0
5,105,170 - -0.9
5,105,170 - +0.0
5,105,170 - -1.5
5,105,170 - -0.7
5,105,170 - -0.5
5,105,173 + -1.9
5,105,240 - +0.5
5,105,297 + Pf1N1B4_4631 0.15 -1.5
5,105,298 - Pf1N1B4_4631 0.15 +0.5
5,105,493 - Pf1N1B4_4631 0.56 +0.5
5,106,237 - Pf1N1B4_4632 0.12 -0.6
5,106,237 - Pf1N1B4_4632 0.12 -1.9
5,106,968 + Pf1N1B4_4632 0.32 +0.5
5,107,982 + Pf1N1B4_4632 0.60 -1.1
5,108,864 + Pf1N1B4_4632 0.84 +0.7
5,108,864 + Pf1N1B4_4632 0.84 -0.9
5,108,865 - Pf1N1B4_4632 0.84 -0.9
5,109,173 + -0.2
5,109,474 + -0.4
5,109,474 + -0.5
5,109,533 - +0.5
5,110,028 - Pf1N1B4_4633 0.46 +0.5
5,110,222 + Pf1N1B4_4633 0.61 -2.1
5,110,222 + Pf1N1B4_4633 0.61 +0.5
5,110,223 - Pf1N1B4_4633 0.61 +0.1
5,110,227 - Pf1N1B4_4633 0.62 -0.3

Or see this region's nucleotide sequence