Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_439 and Pf1N1B4_440 are separated by 676 nucleotides
Pf1N1B4_439 - hypothetical protein, at 521,273 to 521,464
_439
Pf1N1B4_440 - hypothetical protein, at 522,141 to 522,383
_440
Position (kb) 522
523 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 521.145 kb on + strand at 521.145 kb on + strand at 521.145 kb on + strand at 521.148 kb on + strand at 521.148 kb on + strand at 521.149 kb on - strand at 521.149 kb on - strand at 521.181 kb on + strand at 521.182 kb on - strand at 521.202 kb on + strand at 521.202 kb on + strand at 521.203 kb on - strand at 521.203 kb on - strand at 521.203 kb on - strand at 521.273 kb on - strand at 521.357 kb on + strand, within Pf1N1B4_439 at 521.357 kb on + strand, within Pf1N1B4_439 at 521.357 kb on + strand, within Pf1N1B4_439 at 521.357 kb on + strand, within Pf1N1B4_439 at 521.358 kb on - strand, within Pf1N1B4_439 at 521.358 kb on - strand, within Pf1N1B4_439 at 521.358 kb on - strand, within Pf1N1B4_439 at 521.358 kb on - strand, within Pf1N1B4_439 at 521.358 kb on - strand, within Pf1N1B4_439 at 521.363 kb on + strand, within Pf1N1B4_439 at 521.363 kb on + strand, within Pf1N1B4_439 at 521.363 kb on + strand, within Pf1N1B4_439 at 521.364 kb on - strand, within Pf1N1B4_439 at 521.364 kb on - strand, within Pf1N1B4_439 at 521.403 kb on - strand, within Pf1N1B4_439 at 521.403 kb on - strand, within Pf1N1B4_439 at 521.406 kb on - strand, within Pf1N1B4_439 at 521.444 kb on + strand, within Pf1N1B4_439 at 521.444 kb on + strand, within Pf1N1B4_439 at 521.444 kb on + strand, within Pf1N1B4_439 at 521.444 kb on + strand, within Pf1N1B4_439 at 521.445 kb on - strand at 521.463 kb on - strand at 521.463 kb on - strand at 521.533 kb on + strand at 521.534 kb on - strand at 521.534 kb on - strand at 521.571 kb on + strand at 521.604 kb on + strand at 521.604 kb on + strand at 521.604 kb on + strand at 521.604 kb on + strand at 521.608 kb on + strand at 521.608 kb on + strand at 521.608 kb on + strand at 521.608 kb on + strand at 521.608 kb on + strand at 521.608 kb on + strand at 521.609 kb on - strand at 521.610 kb on + strand at 521.610 kb on + strand at 521.610 kb on + strand at 521.610 kb on + strand at 521.610 kb on + strand at 521.611 kb on - strand at 521.668 kb on + strand at 521.668 kb on + strand at 521.694 kb on + strand at 521.694 kb on + strand at 521.694 kb on + strand at 521.694 kb on + strand at 521.695 kb on - strand at 521.728 kb on + strand at 521.728 kb on + strand at 521.729 kb on - strand at 521.735 kb on + strand at 521.736 kb on - strand at 521.750 kb on + strand at 521.774 kb on + strand at 521.775 kb on - strand at 521.802 kb on + strand at 521.803 kb on - strand at 521.828 kb on - strand at 521.829 kb on + strand at 521.829 kb on + strand at 521.830 kb on - strand at 521.830 kb on - strand at 521.830 kb on - strand at 521.830 kb on - strand at 521.833 kb on + strand at 521.834 kb on - strand at 521.834 kb on - strand at 521.882 kb on + strand at 521.883 kb on - strand at 521.929 kb on + strand at 521.990 kb on - strand at 522.021 kb on - strand at 522.021 kb on - strand at 522.080 kb on + strand at 522.081 kb on - strand at 522.081 kb on - strand at 522.116 kb on + strand at 522.116 kb on + strand at 522.116 kb on + strand at 522.117 kb on - strand at 522.182 kb on + strand, within Pf1N1B4_440 at 522.204 kb on + strand, within Pf1N1B4_440 at 522.226 kb on - strand, within Pf1N1B4_440 at 522.226 kb on - strand, within Pf1N1B4_440 at 522.282 kb on + strand at 522.351 kb on + strand, within Pf1N1B4_440 at 522.351 kb on + strand, within Pf1N1B4_440 at 522.351 kb on + strand, within Pf1N1B4_440 at 522.351 kb on + strand, within Pf1N1B4_440 at 522.352 kb on - strand, within Pf1N1B4_440 at 522.352 kb on - strand, within Pf1N1B4_440 at 522.352 kb on - strand, within Pf1N1B4_440 at 522.396 kb on + strand at 522.476 kb on - strand at 522.516 kb on + strand at 522.517 kb on - strand at 522.517 kb on - strand at 522.517 kb on - strand at 522.517 kb on - strand at 522.660 kb on + strand at 522.770 kb on - strand at 522.770 kb on - strand at 522.791 kb on + strand at 522.791 kb on + strand at 522.791 kb on + strand at 522.792 kb on - strand at 522.792 kb on - strand at 522.792 kb on - strand at 522.792 kb on - strand at 522.831 kb on - strand at 523.009 kb on + strand at 523.055 kb on + strand at 523.055 kb on + strand at 523.055 kb on + strand at 523.055 kb on + strand at 523.055 kb on + strand at 523.056 kb on - strand at 523.056 kb on - strand at 523.056 kb on - strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.059 kb on + strand at 523.060 kb on - strand at 523.060 kb on - strand at 523.060 kb on - strand at 523.060 kb on - strand at 523.060 kb on - strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.156 kb on + strand at 523.157 kb on - strand at 523.157 kb on - strand at 523.157 kb on - strand at 523.157 kb on - strand at 523.157 kb on - strand at 523.157 kb on - strand at 523.168 kb on + strand at 523.168 kb on + strand at 523.169 kb on - strand at 523.281 kb on + strand at 523.281 kb on + strand at 523.281 kb on + strand at 523.282 kb on - strand at 523.282 kb on - strand at 523.282 kb on - strand at 523.326 kb on + strand at 523.326 kb on + strand at 523.360 kb on + strand at 523.360 kb on + strand at 523.360 kb on + strand at 523.360 kb on + strand at 523.360 kb on + strand at 523.361 kb on - strand at 523.361 kb on - strand at 523.361 kb on - strand at 523.361 kb on - strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.364 kb on + strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.365 kb on - strand at 523.368 kb on + strand at 523.368 kb on + strand at 523.368 kb on + strand at 523.368 kb on + strand at 523.368 kb on + strand at 523.368 kb on + strand at 523.369 kb on - strand at 523.369 kb on - strand at 523.369 kb on - strand at 523.369 kb on - strand at 523.369 kb on - strand at 523.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 521,145 + -0.1 521,145 + -0.4 521,145 + -0.5 521,148 + -1.5 521,148 + -0.4 521,149 - -0.1 521,149 - +0.9 521,181 + -1.5 521,182 - -0.6 521,202 + +1.6 521,202 + -2.5 521,203 - -2.3 521,203 - +0.4 521,203 - -0.8 521,273 - -2.5 521,357 + Pf1N1B4_439 0.44 -1.1 521,357 + Pf1N1B4_439 0.44 -1.3 521,357 + Pf1N1B4_439 0.44 +0.9 521,357 + Pf1N1B4_439 0.44 -1.7 521,358 - Pf1N1B4_439 0.44 -1.0 521,358 - Pf1N1B4_439 0.44 +0.9 521,358 - Pf1N1B4_439 0.44 +0.7 521,358 - Pf1N1B4_439 0.44 -0.7 521,358 - Pf1N1B4_439 0.44 +0.6 521,363 + Pf1N1B4_439 0.47 -0.7 521,363 + Pf1N1B4_439 0.47 +0.4 521,363 + Pf1N1B4_439 0.47 +1.9 521,364 - Pf1N1B4_439 0.47 -1.5 521,364 - Pf1N1B4_439 0.47 -0.1 521,403 - Pf1N1B4_439 0.68 +1.2 521,403 - Pf1N1B4_439 0.68 -1.9 521,406 - Pf1N1B4_439 0.69 +1.9 521,444 + Pf1N1B4_439 0.89 +0.6 521,444 + Pf1N1B4_439 0.89 -0.5 521,444 + Pf1N1B4_439 0.89 -0.1 521,444 + Pf1N1B4_439 0.89 +0.1 521,445 - -0.1 521,463 - -1.5 521,463 - -1.5 521,533 + -0.2 521,534 - -0.1 521,534 - +0.3 521,571 + -0.7 521,604 + +0.1 521,604 + -2.1 521,604 + +0.1 521,604 + -0.7 521,608 + -1.0 521,608 + -0.7 521,608 + +0.2 521,608 + +0.0 521,608 + +0.7 521,608 + -2.7 521,609 - -0.1 521,610 + +0.5 521,610 + -1.7 521,610 + -0.9 521,610 + -1.5 521,610 + +0.1 521,611 - -1.9 521,668 + +1.4 521,668 + -0.5 521,694 + +1.4 521,694 + +0.2 521,694 + -0.1 521,694 + -1.7 521,695 - -0.0 521,728 + +0.9 521,728 + -0.9 521,729 - -0.3 521,735 + +0.1 521,736 - -0.1 521,750 + -1.1 521,774 + -0.1 521,775 - -0.8 521,802 + +0.1 521,803 - -0.7 521,828 - +0.9 521,829 + -1.9 521,829 + +1.1 521,830 - -0.7 521,830 - -0.5 521,830 - +0.5 521,830 - -0.3 521,833 + -1.5 521,834 - +0.1 521,834 - -0.9 521,882 + +0.5 521,883 - +0.9 521,929 + -0.1 521,990 - -0.7 522,021 - +0.5 522,021 - -0.1 522,080 + +0.5 522,081 - +1.9 522,081 - -0.1 522,116 + -0.4 522,116 + -1.1 522,116 + +0.6 522,117 - -0.1 522,182 + Pf1N1B4_440 0.17 -0.7 522,204 + Pf1N1B4_440 0.26 +0.9 522,226 - Pf1N1B4_440 0.35 -1.1 522,226 - Pf1N1B4_440 0.35 -1.9 522,282 + -0.5 522,351 + Pf1N1B4_440 0.86 -0.7 522,351 + Pf1N1B4_440 0.86 -0.1 522,351 + Pf1N1B4_440 0.86 -0.1 522,351 + Pf1N1B4_440 0.86 -0.8 522,352 - Pf1N1B4_440 0.87 -0.3 522,352 - Pf1N1B4_440 0.87 +0.1 522,352 - Pf1N1B4_440 0.87 -1.8 522,396 + +1.5 522,476 - -0.5 522,516 + -1.2 522,517 - +1.0 522,517 - +0.9 522,517 - -0.1 522,517 - -0.7 522,660 + -0.1 522,770 - +0.3 522,770 - -1.1 522,791 + -0.9 522,791 + -0.7 522,791 + -1.5 522,792 - +1.9 522,792 - -1.5 522,792 - +0.9 522,792 - -1.4 522,831 - -1.1 523,009 + +0.2 523,055 + -0.0 523,055 + +3.2 523,055 + -0.3 523,055 + -0.4 523,055 + -1.9 523,056 - +0.9 523,056 - +0.0 523,056 - -1.7 523,059 + +0.0 523,059 + +0.6 523,059 + +0.6 523,059 + +0.3 523,059 + -0.2 523,059 + -0.1 523,059 + -0.8 523,059 + +0.9 523,059 + +0.7 523,059 + -0.5 523,059 + +0.1 523,060 - +0.1 523,060 - -0.9 523,060 - -1.2 523,060 - -0.1 523,060 - -0.5 523,156 + +0.9 523,156 + -0.1 523,156 + +0.9 523,156 + +1.2 523,156 + -0.1 523,156 + +0.5 523,156 + -1.1 523,157 - -1.5 523,157 - -1.5 523,157 - -0.1 523,157 - -2.1 523,157 - -0.4 523,157 - +0.5 523,168 + -0.4 523,168 + -1.1 523,169 - +0.9 523,281 + +1.5 523,281 + -0.7 523,281 + -0.1 523,282 - +0.3 523,282 - +1.5 523,282 - -1.9 523,326 + -1.0 523,326 + +0.1 523,360 + -1.1 523,360 + -0.1 523,360 + +0.7 523,360 + +1.1 523,360 + +0.1 523,361 - -0.1 523,361 - -0.3 523,361 - -1.5 523,361 - +0.0 523,364 + -1.3 523,364 + +0.1 523,364 + -0.1 523,364 + +1.3 523,364 + +1.5 523,364 + -0.7 523,364 + -1.0 523,364 + -0.1 523,364 + -1.0 523,364 + -1.1 523,364 + +0.5 523,364 + -0.1 523,365 - +0.9 523,365 - +0.5 523,365 - -1.3 523,365 - -1.1 523,365 - +1.9 523,365 - -0.5 523,365 - -1.7 523,365 - -0.1 523,365 - -0.1 523,365 - -1.9 523,365 - -0.7 523,365 - -0.4 523,365 - -0.1 523,365 - -0.8 523,365 - -1.9 523,368 + -0.1 523,368 + -0.5 523,368 + -0.1 523,368 + -0.1 523,368 + -0.4 523,368 + -0.7 523,369 - +0.9 523,369 - +0.5 523,369 - -0.7 523,369 - +0.9 523,369 - -0.9 523,369 - -2.3
Or see this region's nucleotide sequence