Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4131 and Pf1N1B4_4132 overlap by 4 nucleotides Pf1N1B4_4132 and Pf1N1B4_4133 are separated by 90 nucleotides
Pf1N1B4_4131 - Mobile element protein, at 4,572,187 to 4,572,507
_4131
Pf1N1B4_4132 - Mobile element protein, at 4,572,504 to 4,572,839
_4132
Pf1N1B4_4133 - Mobile element protein, at 4,572,930 to 4,573,388
_4133
Position (kb)
4572
4573 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4571.524 kb on + strand at 4571.525 kb on - strand at 4571.540 kb on + strand at 4571.563 kb on - strand at 4571.564 kb on + strand at 4571.564 kb on + strand at 4571.564 kb on + strand at 4571.564 kb on + strand at 4571.594 kb on + strand at 4571.651 kb on - strand at 4571.760 kb on + strand at 4571.760 kb on + strand at 4571.986 kb on + strand at 4571.986 kb on + strand at 4571.986 kb on + strand at 4571.987 kb on - strand at 4572.056 kb on + strand at 4572.056 kb on + strand at 4572.057 kb on - strand at 4572.088 kb on + strand at 4572.385 kb on - strand, within Pf1N1B4_4131 at 4572.621 kb on + strand, within Pf1N1B4_4132 at 4572.621 kb on + strand, within Pf1N1B4_4132 at 4572.621 kb on + strand, within Pf1N1B4_4132 at 4572.732 kb on - strand, within Pf1N1B4_4132 at 4572.784 kb on + strand, within Pf1N1B4_4132 at 4572.922 kb on + strand at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.074 kb on + strand at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.074 kb on + strand at 4573.074 kb on + strand at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.074 kb on + strand, within Pf1N1B4_4133 at 4573.075 kb on - strand at 4573.075 kb on - strand, within Pf1N1B4_4133 at 4573.288 kb on - strand at 4573.294 kb on - strand, within Pf1N1B4_4133 at 4573.375 kb on + strand at 4573.376 kb on - strand at 4573.386 kb on + strand at 4573.386 kb on + strand at 4573.386 kb on + strand at 4573.386 kb on + strand at 4573.386 kb on + strand at 4573.386 kb on + strand at 4573.387 kb on - strand at 4573.387 kb on - strand at 4573.387 kb on - strand at 4573.387 kb on - strand at 4573.434 kb on + strand at 4573.435 kb on - strand at 4573.435 kb on - strand at 4573.435 kb on - strand at 4573.679 kb on + strand at 4573.795 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,571,524 + +0.6 4,571,525 - +0.2 4,571,540 + -1.2 4,571,563 - -0.1 4,571,564 + +0.1 4,571,564 + +1.3 4,571,564 + -0.4 4,571,564 + -0.0 4,571,594 + -0.4 4,571,651 - +0.9 4,571,760 + -1.6 4,571,760 + +1.0 4,571,986 + +0.9 4,571,986 + -0.2 4,571,986 + +1.0 4,571,987 - +0.0 4,572,056 + -2.4 4,572,056 + +0.6 4,572,057 - +0.4 4,572,088 + +2.2 4,572,385 - Pf1N1B4_4131 0.62 +0.6 4,572,621 + Pf1N1B4_4132 0.35 -1.1 4,572,621 + Pf1N1B4_4132 0.35 -1.8 4,572,621 + Pf1N1B4_4132 0.35 +0.6 4,572,732 - Pf1N1B4_4132 0.68 -0.5 4,572,784 + Pf1N1B4_4132 0.83 -1.7 4,572,922 + -0.9 4,573,074 + Pf1N1B4_4133 0.31 -0.2 4,573,074 + +0.6 4,573,074 + Pf1N1B4_4133 0.31 +0.0 4,573,074 + Pf1N1B4_4133 0.31 +0.2 4,573,074 + -0.1 4,573,074 + -0.4 4,573,074 + Pf1N1B4_4133 0.31 -1.3 4,573,074 + Pf1N1B4_4133 0.31 -0.5 4,573,074 + Pf1N1B4_4133 0.31 +0.2 4,573,075 - -1.7 4,573,075 - Pf1N1B4_4133 0.32 -2.6 4,573,288 - +0.6 4,573,294 - Pf1N1B4_4133 0.79 -2.4 4,573,375 + -1.2 4,573,376 - -0.8 4,573,386 + -0.1 4,573,386 + -0.5 4,573,386 + -0.4 4,573,386 + +0.6 4,573,386 + -0.5 4,573,386 + -1.0 4,573,387 - -1.4 4,573,387 - -0.6 4,573,387 - -0.4 4,573,387 - -0.4 4,573,434 + +0.4 4,573,435 - -0.9 4,573,435 - +0.6 4,573,435 - -0.1 4,573,679 + +0.0 4,573,795 + -0.8
Or see this region's nucleotide sequence