Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4025 and Pf1N1B4_4026 overlap by 4 nucleotides Pf1N1B4_4026 and Pf1N1B4_4027 overlap by 2 nucleotides Pf1N1B4_4027 and Pf1N1B4_4028 are separated by 200 nucleotides Pf1N1B4_4028 and Pf1N1B4_4029 are separated by 7 nucleotides
Pf1N1B4_4025 - Outer membrane porin, OprD family, at 4,476,633 to 4,477,394
_4025
Pf1N1B4_4026 - Outer membrane porin, OprD family, at 4,477,391 to 4,477,894
_4026
Pf1N1B4_4027 - hypothetical protein, at 4,477,893 to 4,478,051
_4027
Pf1N1B4_4028 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 4,478,252 to 4,479,715
_4028
Pf1N1B4_4029 - NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3), at 4,479,723 to 4,481,255
_4029
Position (kb)
4478
4479
4480 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4477.265 kb on - strand, within Pf1N1B4_4025 at 4477.298 kb on - strand, within Pf1N1B4_4025 at 4477.345 kb on + strand at 4477.346 kb on - strand at 4477.541 kb on - strand, within Pf1N1B4_4026 at 4477.581 kb on + strand, within Pf1N1B4_4026 at 4477.582 kb on - strand, within Pf1N1B4_4026 at 4477.582 kb on - strand, within Pf1N1B4_4026 at 4477.582 kb on - strand, within Pf1N1B4_4026 at 4477.821 kb on + strand, within Pf1N1B4_4026 at 4477.822 kb on - strand, within Pf1N1B4_4026 at 4477.823 kb on + strand at 4477.823 kb on + strand, within Pf1N1B4_4026 at 4477.823 kb on + strand, within Pf1N1B4_4026 at 4477.823 kb on + strand, within Pf1N1B4_4026 at 4477.823 kb on + strand, within Pf1N1B4_4026 at 4477.824 kb on - strand, within Pf1N1B4_4026 at 4477.824 kb on - strand, within Pf1N1B4_4026 at 4477.824 kb on - strand, within Pf1N1B4_4026 at 4477.876 kb on + strand at 4477.946 kb on - strand, within Pf1N1B4_4027 at 4477.946 kb on - strand, within Pf1N1B4_4027 at 4477.951 kb on + strand, within Pf1N1B4_4027 at 4478.095 kb on - strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.134 kb on + strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.135 kb on - strand at 4478.149 kb on + strand at 4478.150 kb on - strand at 4478.150 kb on - strand at 4478.150 kb on - strand at 4478.150 kb on - strand at 4478.150 kb on - strand at 4478.150 kb on - strand at 4478.150 kb on - strand at 4478.225 kb on - strand at 4478.413 kb on - strand, within Pf1N1B4_4028 at 4478.413 kb on - strand, within Pf1N1B4_4028 at 4478.413 kb on - strand, within Pf1N1B4_4028 at 4478.413 kb on - strand, within Pf1N1B4_4028 at 4478.712 kb on + strand, within Pf1N1B4_4028 at 4478.713 kb on - strand, within Pf1N1B4_4028 at 4479.228 kb on + strand, within Pf1N1B4_4028 at 4479.228 kb on + strand, within Pf1N1B4_4028 at 4479.229 kb on - strand, within Pf1N1B4_4028 at 4479.435 kb on + strand, within Pf1N1B4_4028 at 4479.489 kb on + strand, within Pf1N1B4_4028 at 4479.490 kb on - strand, within Pf1N1B4_4028 at 4479.830 kb on - strand at 4480.155 kb on - strand, within Pf1N1B4_4029 at 4480.162 kb on + strand, within Pf1N1B4_4029 at 4480.259 kb on - strand, within Pf1N1B4_4029 at 4480.259 kb on - strand, within Pf1N1B4_4029 at 4480.352 kb on - strand, within Pf1N1B4_4029 at 4480.444 kb on + strand, within Pf1N1B4_4029 at 4480.444 kb on + strand, within Pf1N1B4_4029 at 4480.588 kb on + strand, within Pf1N1B4_4029
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,477,265 - Pf1N1B4_4025 0.83 +0.4 4,477,298 - Pf1N1B4_4025 0.87 +1.0 4,477,345 + -1.9 4,477,346 - +0.3 4,477,541 - Pf1N1B4_4026 0.30 -0.4 4,477,581 + Pf1N1B4_4026 0.38 +0.5 4,477,582 - Pf1N1B4_4026 0.38 -0.3 4,477,582 - Pf1N1B4_4026 0.38 +0.9 4,477,582 - Pf1N1B4_4026 0.38 -0.6 4,477,821 + Pf1N1B4_4026 0.85 -0.3 4,477,822 - Pf1N1B4_4026 0.86 -1.3 4,477,823 + -0.3 4,477,823 + Pf1N1B4_4026 0.86 -0.5 4,477,823 + Pf1N1B4_4026 0.86 -0.6 4,477,823 + Pf1N1B4_4026 0.86 -0.3 4,477,823 + Pf1N1B4_4026 0.86 -0.3 4,477,824 - Pf1N1B4_4026 0.86 -0.8 4,477,824 - Pf1N1B4_4026 0.86 +1.3 4,477,824 - Pf1N1B4_4026 0.86 -1.3 4,477,876 + -0.6 4,477,946 - Pf1N1B4_4027 0.33 -0.3 4,477,946 - Pf1N1B4_4027 0.33 -0.6 4,477,951 + Pf1N1B4_4027 0.36 -0.6 4,478,095 - -1.6 4,478,134 + -0.3 4,478,134 + +0.2 4,478,134 + -0.4 4,478,134 + -0.6 4,478,134 + +0.7 4,478,134 + +1.1 4,478,134 + +0.5 4,478,134 + +0.3 4,478,134 + -1.5 4,478,134 + -0.9 4,478,134 + -0.3 4,478,134 + +0.3 4,478,135 - -1.3 4,478,135 - -0.9 4,478,135 - -0.5 4,478,135 - -0.5 4,478,135 - -0.9 4,478,135 - -0.3 4,478,135 - +1.0 4,478,135 - +0.1 4,478,135 - +0.1 4,478,135 - +1.9 4,478,135 - -1.1 4,478,135 - -0.0 4,478,135 - -1.0 4,478,135 - -0.6 4,478,135 - +0.7 4,478,135 - -1.4 4,478,149 + +0.0 4,478,150 - -0.1 4,478,150 - -2.6 4,478,150 - -0.5 4,478,150 - -0.1 4,478,150 - -0.1 4,478,150 - -1.6 4,478,150 - -0.9 4,478,225 - -1.5 4,478,413 - Pf1N1B4_4028 0.11 -0.4 4,478,413 - Pf1N1B4_4028 0.11 +0.4 4,478,413 - Pf1N1B4_4028 0.11 -1.9 4,478,413 - Pf1N1B4_4028 0.11 -0.3 4,478,712 + Pf1N1B4_4028 0.31 +0.1 4,478,713 - Pf1N1B4_4028 0.31 -1.5 4,479,228 + Pf1N1B4_4028 0.67 -1.2 4,479,228 + Pf1N1B4_4028 0.67 -2.1 4,479,229 - Pf1N1B4_4028 0.67 -1.6 4,479,435 + Pf1N1B4_4028 0.81 -0.9 4,479,489 + Pf1N1B4_4028 0.84 -0.0 4,479,490 - Pf1N1B4_4028 0.85 +0.7 4,479,830 - +0.7 4,480,155 - Pf1N1B4_4029 0.28 -0.9 4,480,162 + Pf1N1B4_4029 0.29 -1.3 4,480,259 - Pf1N1B4_4029 0.35 -1.5 4,480,259 - Pf1N1B4_4029 0.35 -1.6 4,480,352 - Pf1N1B4_4029 0.41 -0.6 4,480,444 + Pf1N1B4_4029 0.47 -0.6 4,480,444 + Pf1N1B4_4029 0.47 -0.3 4,480,588 + Pf1N1B4_4029 0.56 -0.5
Or see this region's nucleotide sequence