Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_226 and Pf1N1B4_227 are separated by 74 nucleotides Pf1N1B4_227 and Pf1N1B4_228 are separated by 74 nucleotides Pf1N1B4_228 and Pf1N1B4_229 are separated by 90 nucleotides
Pf1N1B4_226 - Inhibitor of the KinA pathway to sporulation, predicted exonuclease, at 287,856 to 288,404
_226
Pf1N1B4_227 - FIG074102: hypothetical protein, at 288,479 to 288,763
_227
Pf1N1B4_228 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 288,838 to 289,641
_228
Pf1N1B4_229 - Chemotaxis protein CheV (EC 2.7.3.-), at 289,732 to 290,667
_229
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 288.163 kb on - strand, within Pf1N1B4_226 at 288.362 kb on + strand at 288.363 kb on - strand at 288.440 kb on - strand at 288.484 kb on + strand at 288.484 kb on + strand at 288.498 kb on - strand at 288.740 kb on + strand at 288.740 kb on + strand at 288.740 kb on + strand at 288.740 kb on + strand at 288.741 kb on - strand at 288.839 kb on + strand at 288.840 kb on - strand at 289.072 kb on - strand, within Pf1N1B4_228 at 289.072 kb on - strand, within Pf1N1B4_228 at 289.083 kb on - strand, within Pf1N1B4_228 at 289.661 kb on - strand at 289.675 kb on - strand at 289.675 kb on - strand at 289.677 kb on - strand at 289.722 kb on - strand at 289.741 kb on + strand at 289.741 kb on + strand at 289.742 kb on - strand at 289.742 kb on - strand at 289.742 kb on - strand at 289.742 kb on - strand at 289.771 kb on + strand at 289.772 kb on - strand at 289.880 kb on + strand, within Pf1N1B4_229 at 289.880 kb on + strand, within Pf1N1B4_229 at 289.880 kb on + strand, within Pf1N1B4_229 at 289.881 kb on - strand, within Pf1N1B4_229 at 289.881 kb on - strand, within Pf1N1B4_229 at 289.881 kb on - strand, within Pf1N1B4_229 at 289.881 kb on - strand, within Pf1N1B4_229 at 290.107 kb on - strand, within Pf1N1B4_229 at 290.107 kb on - strand, within Pf1N1B4_229 at 290.193 kb on - strand, within Pf1N1B4_229 at 290.193 kb on - strand, within Pf1N1B4_229 at 290.273 kb on + strand, within Pf1N1B4_229 at 290.274 kb on - strand, within Pf1N1B4_229 at 290.274 kb on - strand, within Pf1N1B4_229 at 290.378 kb on + strand at 290.392 kb on - strand, within Pf1N1B4_229 at 290.626 kb on + strand at 290.626 kb on + strand at 290.626 kb on + strand at 290.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 288,163 - Pf1N1B4_226 0.56 +0.1 288,362 + +1.3 288,363 - -1.5 288,440 - -0.0 288,484 + -0.2 288,484 + +0.4 288,498 - +0.8 288,740 + -0.2 288,740 + -0.0 288,740 + -0.7 288,740 + +0.1 288,741 - +1.8 288,839 + -0.2 288,840 - +2.8 289,072 - Pf1N1B4_228 0.29 -0.2 289,072 - Pf1N1B4_228 0.29 -0.9 289,083 - Pf1N1B4_228 0.30 -1.2 289,661 - -0.3 289,675 - -0.8 289,675 - -0.7 289,677 - -0.6 289,722 - +0.8 289,741 + +2.4 289,741 + +0.8 289,742 - +0.6 289,742 - -0.2 289,742 - -0.6 289,742 - -0.8 289,771 + +1.8 289,772 - +0.4 289,880 + Pf1N1B4_229 0.16 +0.7 289,880 + Pf1N1B4_229 0.16 -0.3 289,880 + Pf1N1B4_229 0.16 +0.2 289,881 - Pf1N1B4_229 0.16 -0.4 289,881 - Pf1N1B4_229 0.16 -2.2 289,881 - Pf1N1B4_229 0.16 -1.2 289,881 - Pf1N1B4_229 0.16 -0.6 290,107 - Pf1N1B4_229 0.40 -0.8 290,107 - Pf1N1B4_229 0.40 -1.0 290,193 - Pf1N1B4_229 0.49 +0.7 290,193 - Pf1N1B4_229 0.49 -0.5 290,273 + Pf1N1B4_229 0.58 -1.2 290,274 - Pf1N1B4_229 0.58 -0.3 290,274 - Pf1N1B4_229 0.58 -0.5 290,378 + +0.8 290,392 - Pf1N1B4_229 0.71 -0.1 290,626 + +0.5 290,626 + -0.6 290,626 + +0.8 290,627 - -0.8
Or see this region's nucleotide sequence