Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_117 and Pf1N1B4_118 are separated by 40 nucleotides Pf1N1B4_118 and Pf1N1B4_119 are separated by 277 nucleotides
Pf1N1B4_117 - Iron siderophore sensor protein, at 123,814 to 124,788
_117
Pf1N1B4_118 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily, at 124,829 to 125,329
_118
Pf1N1B4_119 - Putative haemolysin/cytolysin secreted via TPS pathway, at 125,607 to 130,118
_119
Position (kb) 124
125
126 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 124.074 kb on + strand, within Pf1N1B4_117 at 124.074 kb on + strand at 124.076 kb on + strand, within Pf1N1B4_117 at 124.077 kb on - strand, within Pf1N1B4_117 at 124.246 kb on - strand, within Pf1N1B4_117 at 124.436 kb on + strand, within Pf1N1B4_117 at 124.437 kb on - strand, within Pf1N1B4_117 at 124.448 kb on + strand, within Pf1N1B4_117 at 124.449 kb on - strand, within Pf1N1B4_117 at 124.505 kb on - strand, within Pf1N1B4_117 at 124.505 kb on - strand, within Pf1N1B4_117 at 124.839 kb on - strand at 124.839 kb on - strand at 124.839 kb on - strand at 124.883 kb on - strand at 124.883 kb on - strand, within Pf1N1B4_118 at 124.883 kb on - strand, within Pf1N1B4_118 at 124.884 kb on + strand, within Pf1N1B4_118 at 124.884 kb on + strand, within Pf1N1B4_118 at 124.884 kb on + strand, within Pf1N1B4_118 at 124.885 kb on - strand, within Pf1N1B4_118 at 124.885 kb on - strand, within Pf1N1B4_118 at 124.885 kb on - strand at 125.406 kb on + strand at 125.406 kb on + strand at 125.407 kb on - strand at 125.407 kb on - strand at 125.437 kb on + strand at 125.441 kb on + strand at 125.441 kb on + strand at 125.441 kb on + strand at 125.442 kb on - strand at 125.456 kb on + strand at 125.456 kb on + strand at 125.456 kb on + strand at 125.457 kb on - strand at 125.478 kb on + strand at 125.484 kb on + strand at 125.608 kb on + strand at 125.608 kb on + strand at 125.608 kb on + strand at 125.608 kb on + strand at 125.608 kb on + strand at 125.609 kb on - strand at 125.609 kb on - strand at 125.609 kb on - strand at 125.609 kb on - strand at 125.609 kb on - strand at 125.720 kb on + strand at 125.974 kb on + strand at 125.974 kb on + strand at 126.238 kb on + strand, within Pf1N1B4_119 at 126.239 kb on - strand, within Pf1N1B4_119
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 124,074 + Pf1N1B4_117 0.27 -0.8 124,074 + +0.4 124,076 + Pf1N1B4_117 0.27 -0.0 124,077 - Pf1N1B4_117 0.27 -1.6 124,246 - Pf1N1B4_117 0.44 -1.6 124,436 + Pf1N1B4_117 0.64 -1.2 124,437 - Pf1N1B4_117 0.64 -2.6 124,448 + Pf1N1B4_117 0.65 +0.2 124,449 - Pf1N1B4_117 0.65 +0.4 124,505 - Pf1N1B4_117 0.71 +0.3 124,505 - Pf1N1B4_117 0.71 -0.2 124,839 - -0.3 124,839 - +1.2 124,839 - +0.2 124,883 - +0.8 124,883 - Pf1N1B4_118 0.11 +1.9 124,883 - Pf1N1B4_118 0.11 +1.0 124,884 + Pf1N1B4_118 0.11 +2.2 124,884 + Pf1N1B4_118 0.11 -0.0 124,884 + Pf1N1B4_118 0.11 +0.8 124,885 - Pf1N1B4_118 0.11 -2.0 124,885 - Pf1N1B4_118 0.11 +0.8 124,885 - +0.8 125,406 + -1.2 125,406 + +0.3 125,407 - -0.6 125,407 - +2.8 125,437 + +0.4 125,441 + +0.8 125,441 + -0.6 125,441 + -0.8 125,442 - +0.4 125,456 + -2.0 125,456 + -2.4 125,456 + -0.0 125,457 - -0.2 125,478 + -0.5 125,484 + +0.8 125,608 + -0.6 125,608 + +0.8 125,608 + +0.1 125,608 + +0.3 125,608 + -1.0 125,609 - +0.7 125,609 - +0.8 125,609 - -0.2 125,609 - +1.5 125,609 - -1.6 125,720 + +0.4 125,974 + -1.8 125,974 + +0.0 126,238 + Pf1N1B4_119 0.14 +0.8 126,239 - Pf1N1B4_119 0.14 -0.6
Or see this region's nucleotide sequence