Strain Fitness in Pantoea sp. MT58 around IAI47_16220

Experiment: copper (II) chloride 1 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 1 uM, anaerobic
3,435,662	-		IAI47_16215	0.63	-1.1
3,435,803	+		IAI47_16215	0.68	-1.2
3,435,803	+		IAI47_16215	0.68	-2.6
3,435,803	+		IAI47_16215	0.68	-2.0
3,435,827	+		IAI47_16215	0.69	-0.9
3,435,827	+		IAI47_16215	0.69	+0.0
3,435,827	+		IAI47_16215	0.69	-2.0
3,435,828	-		IAI47_16215	0.70	+0.1
3,435,828	-		IAI47_16215	0.70	-2.6
3,435,828	-		IAI47_16215	0.70	-3.1
3,435,879	+		IAI47_16215	0.72	-1.0
3,435,879	+		IAI47_16215	0.72	-2.2
3,435,880	-		IAI47_16215	0.72	-2.7
3,435,881	+		IAI47_16215	0.72	-0.8
3,435,882	-		IAI47_16215	0.72	-2.5
3,435,882	-		IAI47_16215	0.72	-1.6
3,435,882	-		IAI47_16215	0.72	-1.5
3,435,882	-		IAI47_16215	0.72	-2.2
3,435,882	-		IAI47_16215	0.72	-2.0
3,435,882	-		IAI47_16215	0.72	-2.2
3,435,892	+		IAI47_16215	0.72	-0.4
3,435,892	+		IAI47_16215	0.72	-1.0
3,435,893	-		IAI47_16215	0.72	-2.2
3,435,893	-		IAI47_16215	0.72	-3.0
3,435,893	-		IAI47_16215	0.72	-1.4
3,435,979	+		IAI47_16215	0.76	-1.6
3,435,979	+		IAI47_16215	0.76	-1.4
3,435,980	-		IAI47_16215	0.76	-1.5
3,435,980	-		IAI47_16215	0.76	-2.2
3,435,980	-		IAI47_16215	0.76	-0.5
3,435,980	-		IAI47_16215	0.76	-3.2
3,436,009	-		IAI47_16215	0.77	-1.4
3,436,081	-		IAI47_16215	0.80	-1.9
3,436,081	-		IAI47_16215	0.80	+0.2
3,436,100	+		IAI47_16215	0.81	-0.2
3,436,108	+		IAI47_16215	0.81	-0.6
3,436,108	+		IAI47_16215	0.81	-2.0
3,436,212	+		IAI47_16215	0.85	-0.7
3,436,212	+		IAI47_16215	0.85	-2.2
3,436,212	+		IAI47_16215	0.85	-1.9
3,436,213	-		IAI47_16215	0.85	-2.8
3,436,213	-		IAI47_16215	0.85	-4.0
3,436,213	-		IAI47_16215	0.85	-2.2
3,436,213	-		IAI47_16215	0.85	-2.2
3,436,276	+		IAI47_16215	0.88	-0.8
3,436,276	+		IAI47_16215	0.88	-2.4
3,436,276	+		IAI47_16215	0.88	-0.8
3,436,276	+		IAI47_16215	0.88	-1.9
3,436,277	-		IAI47_16215	0.88	-2.1
3,436,389	+				-2.5
3,436,389	+				-0.5
3,436,390	-				-2.5
3,436,447	-				-0.8
3,436,500	+				-1.8
3,436,501	-				-1.1
3,436,501	-				-0.2
3,436,581	+				-2.7
3,436,581	+				-1.7
3,436,582	-				-1.3
3,436,582	-				-2.1
3,436,582	-				-1.6
3,436,582	-				-2.3
3,436,582	-				-2.2
3,436,582	-				-1.1
3,436,582	-				-1.3
3,436,583	+				-0.4
3,436,583	+				-2.5
3,436,583	+				-2.2
3,436,583	+				-1.0
3,436,583	+				-2.7
3,436,583	+				-3.1
3,436,583	+				-1.0
3,436,583	+				-1.4
3,436,584	-				-2.1
3,436,584	-				-1.7
3,436,584	-				-0.3
3,436,584	-				-1.9
3,436,584	-				-1.3
3,436,584	-				-1.1
3,436,584	-				-0.4
3,436,584	-				-3.0
3,436,584	-				-1.3
3,436,584	-				-2.7
3,436,584	-				-1.0
3,436,584	-				-3.1
3,436,584	-				-1.8
3,436,584	-				-1.1
3,436,626	+				-0.4
3,436,626	+				-0.7
3,436,626	+				-3.3
3,436,656	+				-1.0
3,436,657	-				-1.6
3,436,676	+		IAI47_16220	0.20	-0.8
3,436,685	+		IAI47_16220	0.33	-0.4
3,436,685	+		IAI47_16220	0.33	-1.5
3,436,686	-		IAI47_16220	0.35	-1.2
3,436,686	-		IAI47_16220	0.35	+0.9
3,436,686	-		IAI47_16220	0.35	-0.1
3,436,686	-		IAI47_16220	0.35	-1.7
3,436,697	+		IAI47_16220	0.51	-0.8
3,436,700	+		IAI47_16220	0.55	-0.7
3,436,700	+		IAI47_16220	0.55	-2.7
3,436,700	+		IAI47_16220	0.55	-1.6
3,436,700	+		IAI47_16220	0.55	-2.5
3,436,700	+		IAI47_16220	0.55	-3.5
3,436,700	+		IAI47_16220	0.55	-0.9
3,436,701	-		IAI47_16220	0.57	+0.3
3,436,701	-		IAI47_16220	0.57	+0.7
3,436,701	-		IAI47_16220	0.57	+0.7
3,436,701	-		IAI47_16220	0.57	-0.8
3,436,701	-		IAI47_16220	0.57	-1.5
3,436,701	-		IAI47_16220	0.57	+0.3
3,436,701	-		IAI47_16220	0.57	-0.3
3,436,701	-		IAI47_16220	0.57	+0.2
3,436,701	-		IAI47_16220	0.57	-0.7
3,436,732	+				-3.2
3,436,732	+				-1.8
3,436,732	+				-0.8
3,436,733	-				-0.7
3,436,733	-				-0.4
3,436,733	-				-1.3
3,436,738	+				-1.5
3,436,738	+				-0.3
3,436,738	+				-2.1
3,436,739	-				+1.4
3,436,739	-				-0.2
3,436,781	-				+0.0
3,436,781	-				+0.1
3,436,797	+				-3.2
3,436,797	+				-1.7
3,436,797	+				-3.4
3,436,798	-				-0.7
3,436,798	-				-0.4
3,436,869	+				+1.3
3,436,869	+				-0.0
3,436,915	-				-0.8
3,436,939	+				+0.1
3,436,960	+				+1.0
3,436,961	-				+0.4
3,437,012	+		IAI47_16225	0.13	-0.1
3,437,013	-		IAI47_16225	0.13	+0.7
3,437,013	-		IAI47_16225	0.13	+0.9
3,437,166	+		IAI47_16225	0.35	+0.2
3,437,166	+		IAI47_16225	0.35	-0.2
3,437,167	-		IAI47_16225	0.35	-0.0
3,437,167	-		IAI47_16225	0.35	-1.0
3,437,167	-		IAI47_16225	0.35	+1.1
3,437,167	-		IAI47_16225	0.35	-0.6
3,437,172	+		IAI47_16225	0.36	-0.2
3,437,172	+		IAI47_16225	0.36	-0.2
3,437,172	+		IAI47_16225	0.36	+0.6
3,437,172	+		IAI47_16225	0.36	+2.7
3,437,172	+		IAI47_16225	0.36	+0.8
3,437,172	+		IAI47_16225	0.36	-1.7
3,437,172	+		IAI47_16225	0.36	-0.3
3,437,172	+		IAI47_16225	0.36	+0.2
3,437,173	-		IAI47_16225	0.36	+0.9
3,437,173	-		IAI47_16225	0.36	+0.7
3,437,173	-		IAI47_16225	0.36	-1.6
3,437,173	-		IAI47_16225	0.36	+0.5
3,437,173	-		IAI47_16225	0.36	+0.6
3,437,173	-		IAI47_16225	0.36	-0.5
3,437,173	-		IAI47_16225	0.36	+0.1
3,437,173	-		IAI47_16225	0.36	-0.1
3,437,173	-		IAI47_16225	0.36	+2.1
3,437,173	-		IAI47_16225	0.36	-0.5
3,437,173	-		IAI47_16225	0.36	-0.9
3,437,173	-		IAI47_16225	0.36	+0.0
3,437,173	-		IAI47_16225	0.36	-0.4
3,437,173	-		IAI47_16225	0.36	+0.3
3,437,173	-		IAI47_16225	0.36	-0.7
3,437,173	-		IAI47_16225	0.36	-0.6
3,437,173	-		IAI47_16225	0.36	+0.4
3,437,173	-		IAI47_16225	0.36	-0.2
3,437,173	-		IAI47_16225	0.36	+0.8
3,437,173	-		IAI47_16225	0.36	+0.8
3,437,173	-		IAI47_16225	0.36	+0.6
3,437,209	-		IAI47_16225	0.41	-1.4
3,437,264	-		IAI47_16225	0.49	+0.2
3,437,292	-		IAI47_16225	0.53	-1.8
3,437,302	+		IAI47_16225	0.54	+0.9
3,437,302	+		IAI47_16225	0.54	+0.1
3,437,303	-		IAI47_16225	0.54	-0.3
3,437,303	-		IAI47_16225	0.54	+1.6
3,437,361	+		IAI47_16225	0.63	+1.0
3,437,361	+		IAI47_16225	0.63	+0.3
3,437,361	+		IAI47_16225	0.63	+0.3
3,437,362	+		IAI47_16225	0.63	+0.1
3,437,362	-		IAI47_16225	0.63	-0.4
3,437,362	-		IAI47_16225	0.63	+0.8
3,437,362	-		IAI47_16225	0.63	-0.4
3,437,362	-		IAI47_16225	0.63	+0.8
3,437,362	-		IAI47_16225	0.63	-0.3
3,437,362	-		IAI47_16225	0.63	-0.4
3,437,362	-		IAI47_16225	0.63	+1.0
3,437,364	+		IAI47_16225	0.63	+0.0
3,437,365	-		IAI47_16225	0.63	-0.1
3,437,365	-		IAI47_16225	0.63	+0.9
3,437,437	+		IAI47_16225	0.73	+1.1
3,437,438	-		IAI47_16225	0.74	-0.3
3,437,455	+		IAI47_16225	0.76	-0.9
3,437,455	+		IAI47_16225	0.76	-0.2
3,437,455	+		IAI47_16225	0.76	-0.5
3,437,456	-		IAI47_16225	0.76	+1.0
3,437,456	-		IAI47_16225	0.76	-2.2
3,437,623	+				-0.2
3,437,623	+				-1.2
3,437,623	+				+0.5
3,437,624	-				+0.2
3,437,624	-				-0.5
3,437,627	+				+0.7
3,437,628	-				-0.2
3,437,628	-				+1.2
3,437,645	-				+0.3
3,437,645	-				-0.0
3,437,645	-				-1.7
3,437,648	+				+0.6
3,437,648	+				-0.4
3,437,648	+				+1.0
3,437,648	+				-1.1
3,437,649	-				-0.5
3,437,649	-				+0.2
3,437,649	-				-0.2
3,437,656	+				-1.8
3,437,656	+				+1.1
3,437,657	-				+0.2
3,437,657	-				-0.4
3,437,657	-				-0.4
3,437,659	+				+0.1
3,437,659	+				-0.0
3,437,659	+				+0.3
3,437,659	+				-0.8
3,437,660	-				+1.4
3,437,660	-				+0.1
3,437,660	-				+0.4
3,437,660	-				-0.0
3,437,660	-				-0.4
3,437,660	-				+0.2
3,437,660	-				+0.4
3,437,660	-				-0.7
3,437,660	-				+0.3
3,437,660	-				-0.7
3,437,671	+				+1.3
3,437,671	+				+1.0
3,437,671	+				+0.3
3,437,693	+				+0.7
3,437,693	+				+1.6
3,437,694	-				-1.0
3,437,694	-				-1.0
3,437,694	-				-0.4
3,437,694	-				+0.1
3,437,694	-				+0.3
3,437,697	-				-0.6
3,437,697	-				-0.7
3,437,712	+				+0.8
3,437,712	+				-0.0
3,437,713	-				-0.2
3,437,713	-				+0.2
3,437,721	+				+0.6