Strain Fitness in Pantoea sp. MT58 around IAI47_16005

Experiment: copper (II) chloride 1 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 1 uM, anaerobic
3,379,187	+		IAI47_16000	0.37	-1.5
3,379,187	+		IAI47_16000	0.37	-0.2
3,379,187	+		IAI47_16000	0.37	-1.3
3,379,188	-		IAI47_16000	0.37	-2.0
3,379,188	-		IAI47_16000	0.37	-0.5
3,379,188	-		IAI47_16000	0.37	-1.3
3,379,197	-		IAI47_16000	0.37	-1.6
3,379,205	+		IAI47_16000	0.38	-0.2
3,379,206	-		IAI47_16000	0.38	-1.0
3,379,206	-		IAI47_16000	0.38	-1.1
3,379,218	-		IAI47_16000	0.39	-2.4
3,379,235	+		IAI47_16000	0.40	+0.8
3,379,307	-		IAI47_16000	0.44	-1.3
3,379,355	+		IAI47_16000	0.48	-2.9
3,379,356	-		IAI47_16000	0.48	-1.5
3,379,356	-		IAI47_16000	0.48	-2.1
3,379,381	+		IAI47_16000	0.49	-3.2
3,379,381	+		IAI47_16000	0.49	-1.4
3,379,381	+		IAI47_16000	0.49	-0.8
3,379,381	+		IAI47_16000	0.49	-3.4
3,379,381	+		IAI47_16000	0.49	-1.4
3,379,381	+		IAI47_16000	0.49	-2.7
3,379,381	+		IAI47_16000	0.49	-0.3
3,379,382	-		IAI47_16000	0.49	-2.4
3,379,382	-		IAI47_16000	0.49	-3.0
3,379,382	-		IAI47_16000	0.49	+0.0
3,379,392	-		IAI47_16000	0.50	-3.7
3,379,410	+		IAI47_16000	0.51	-2.0
3,379,415	+		IAI47_16000	0.51	-0.1
3,379,463	+		IAI47_16000	0.54	-1.7
3,379,464	-		IAI47_16000	0.55	-2.3
3,379,464	-		IAI47_16000	0.55	-1.7
3,379,464	-		IAI47_16000	0.55	-2.0
3,379,505	+		IAI47_16000	0.57	-2.6
3,379,505	+		IAI47_16000	0.57	-1.4
3,379,505	+		IAI47_16000	0.57	+0.0
3,379,574	-		IAI47_16000	0.62	-0.6
3,379,574	-		IAI47_16000	0.62	-0.1
3,379,577	+		IAI47_16000	0.62	-1.4
3,379,577	+		IAI47_16000	0.62	-0.4
3,379,577	+		IAI47_16000	0.62	-3.1
3,379,578	-		IAI47_16000	0.62	-0.6
3,379,631	+		IAI47_16000	0.65	-1.2
3,379,632	-		IAI47_16000	0.65	-0.9
3,379,647	+		IAI47_16000	0.66	-1.1
3,379,648	-		IAI47_16000	0.66	-0.6
3,379,662	+		IAI47_16000	0.67	-1.6
3,379,663	-		IAI47_16000	0.67	-2.1
3,379,674	-		IAI47_16000	0.68	-1.0
3,379,680	+		IAI47_16000	0.68	-0.9
3,379,680	+		IAI47_16000	0.68	-1.2
3,379,681	-		IAI47_16000	0.68	-0.8
3,379,681	-		IAI47_16000	0.68	-1.3
3,379,681	-		IAI47_16000	0.68	-2.9
3,379,681	-		IAI47_16000	0.68	-0.3
3,379,681	-		IAI47_16000	0.68	-0.6
3,379,728	+		IAI47_16000	0.71	-1.6
3,379,729	-		IAI47_16000	0.71	-1.6
3,379,865	+		IAI47_16000	0.80	-3.1
3,379,866	-		IAI47_16000	0.80	-0.5
3,379,908	+		IAI47_16000	0.83	+0.0
3,379,909	-		IAI47_16000	0.83	-2.2
3,379,920	-		IAI47_16000	0.84	-0.2
3,379,956	+		IAI47_16000	0.86	+0.0
3,379,957	-		IAI47_16000	0.86	-2.4
3,379,957	-		IAI47_16000	0.86	-1.2
3,379,970	+		IAI47_16000	0.87	-1.6
3,380,014	+		IAI47_16000	0.90	+0.5
3,380,014	+		IAI47_16000	0.90	-0.6
3,380,014	+		IAI47_16000	0.90	-1.8
3,380,014	+		IAI47_16000	0.90	-0.1
3,380,015	-		IAI47_16000	0.90	-1.8
3,380,015	-		IAI47_16000	0.90	-1.9
3,380,015	-		IAI47_16000	0.90	-0.8
3,380,015	-		IAI47_16000	0.90	-0.1
3,380,015	-		IAI47_16000	0.90	-2.2
3,380,019	+				-0.6
3,380,020	-				-2.0
3,380,105	+				+0.4
3,380,105	+				-1.7
3,380,105	+				-1.9
3,380,106	-				-0.1
3,380,106	-				-1.0
3,380,106	-				-2.4
3,380,106	-				-1.2
3,380,106	-				-1.6
3,380,106	-				-0.0
3,380,150	+				+0.3
3,380,150	+				-0.6
3,380,150	+				-0.0
3,380,150	+				-0.9
3,380,170	+				-1.7
3,380,171	-				-1.5
3,380,171	-				-0.7
3,380,172	+				-0.9
3,380,172	+				-0.9
3,380,172	+				+0.1
3,380,172	+				-2.0
3,380,173	-				-2.3
3,380,173	-				-1.4
3,380,173	-				-1.5
3,380,194	+				+0.2
3,380,205	+				-1.8
3,380,281	+				-2.7
3,380,281	+				-1.4
3,380,282	-				-1.5
3,380,282	-				-1.9
3,380,282	-				-1.1
3,380,293	+		IAI47_16005	0.11	-0.5
3,380,294	-		IAI47_16005	0.11	-1.1
3,380,294	-		IAI47_16005	0.11	-0.1
3,380,303	+		IAI47_16005	0.12	-1.0
3,380,304	-		IAI47_16005	0.12	-1.9
3,380,304	-		IAI47_16005	0.12	-2.0
3,380,304	-		IAI47_16005	0.12	-2.5
3,380,427	+		IAI47_16005	0.23	-1.8
3,380,428	-		IAI47_16005	0.23	-1.7
3,380,428	-		IAI47_16005	0.23	-0.9
3,380,482	+		IAI47_16005	0.28	-2.4
3,380,482	+		IAI47_16005	0.28	-2.6
3,380,482	+		IAI47_16005	0.28	-1.9
3,380,483	-		IAI47_16005	0.28	-0.5
3,380,494	+		IAI47_16005	0.29	-1.2
3,380,516	+		IAI47_16005	0.31	-2.8
3,380,517	-		IAI47_16005	0.31	-2.8
3,380,517	-		IAI47_16005	0.31	-0.8
3,380,609	+		IAI47_16005	0.40	-3.1
3,380,609	+		IAI47_16005	0.40	+0.6
3,380,609	+		IAI47_16005	0.40	-2.1
3,380,610	-		IAI47_16005	0.40	-1.1
3,380,610	-		IAI47_16005	0.40	-1.3
3,380,610	-		IAI47_16005	0.40	-0.9
3,380,610	-		IAI47_16005	0.40	-1.6
3,380,610	-		IAI47_16005	0.40	-2.8
3,380,675	+		IAI47_16005	0.46	-1.1
3,380,675	+		IAI47_16005	0.46	-2.2
3,380,675	+		IAI47_16005	0.46	-1.8
3,380,675	+		IAI47_16005	0.46	-2.1
3,380,676	-		IAI47_16005	0.46	-2.3
3,380,758	+		IAI47_16005	0.53	-2.3
3,380,759	-		IAI47_16005	0.53	+0.2
3,380,764	+		IAI47_16005	0.54	+0.9
3,380,764	+		IAI47_16005	0.54	-2.3
3,380,764	+		IAI47_16005	0.54	-2.2
3,380,764	+		IAI47_16005	0.54	-2.7
3,380,765	-		IAI47_16005	0.54	-1.3
3,380,765	-		IAI47_16005	0.54	-0.5
3,380,823	-		IAI47_16005	0.59	-0.9
3,380,849	+		IAI47_16005	0.62	-1.1
3,380,849	+		IAI47_16005	0.62	-1.3
3,380,849	+		IAI47_16005	0.62	-0.8
3,380,849	+		IAI47_16005	0.62	-1.3
3,380,849	+		IAI47_16005	0.62	-1.5
3,380,849	+		IAI47_16005	0.62	+0.4
3,380,849	+		IAI47_16005	0.62	-1.0
3,380,849	+		IAI47_16005	0.62	-1.8
3,380,849	+		IAI47_16005	0.62	-2.3
3,380,849	+		IAI47_16005	0.62	-1.3
3,380,850	-		IAI47_16005	0.62	-1.4
3,380,850	-		IAI47_16005	0.62	-1.0
3,380,850	-		IAI47_16005	0.62	-1.6
3,380,850	-		IAI47_16005	0.62	-2.1
3,380,850	-		IAI47_16005	0.62	-2.3
3,380,850	-		IAI47_16005	0.62	-1.4
3,380,850	-		IAI47_16005	0.62	+0.1
3,380,850	-		IAI47_16005	0.62	-1.5
3,380,850	-		IAI47_16005	0.62	+0.0
3,380,850	-		IAI47_16005	0.62	-2.1
3,380,971	+		IAI47_16005	0.73	-2.6
3,381,058	+		IAI47_16005	0.81	-3.5
3,381,058	+		IAI47_16005	0.81	-1.6
3,381,059	-		IAI47_16005	0.81	-1.6
3,381,059	-		IAI47_16005	0.81	-0.5
3,381,108	-		IAI47_16005	0.85	-1.7
3,381,139	+		IAI47_16005	0.88	-1.3
3,381,139	+		IAI47_16005	0.88	-1.4
3,381,251	-				-2.3
3,381,283	+				-1.5
3,381,283	+				+0.8
3,381,284	-				-0.5
3,381,284	-				-1.6
3,381,284	-				-2.2
3,381,285	+				-0.7
3,381,285	+				-1.4
3,381,295	+				-1.3
3,381,295	+				-2.3
3,381,296	-				-2.0
3,381,296	-				-2.1
3,381,340	+				-0.9
3,381,340	+				-2.5
3,381,340	+				-1.7
3,381,340	+				-0.9
3,381,341	-				-1.3
3,381,345	+				-0.4
3,381,345	+				-2.0
3,381,345	+				-2.5
3,381,345	+				-0.3
3,381,346	-				-2.1
3,381,416	+		IAI47_16010	0.10	-2.7
3,381,417	-		IAI47_16010	0.10	-1.9
3,381,417	-		IAI47_16010	0.10	-1.9
3,381,417	-		IAI47_16010	0.10	-0.6
3,381,482	+		IAI47_16010	0.15	-1.9
3,381,482	+		IAI47_16010	0.15	-1.3
3,381,482	+		IAI47_16010	0.15	-1.5
3,381,482	+		IAI47_16010	0.15	-1.3
3,381,483	-		IAI47_16010	0.15	-0.4
3,381,553	+		IAI47_16010	0.20	-1.0
3,381,553	+		IAI47_16010	0.20	-2.9
3,381,554	-		IAI47_16010	0.20	-1.4
3,381,554	-		IAI47_16010	0.20	-1.5
3,381,561	+		IAI47_16010	0.20	-1.4
3,381,561	+		IAI47_16010	0.20	-3.0
3,381,561	+		IAI47_16010	0.20	-2.0
3,381,561	+		IAI47_16010	0.20	-2.3
3,381,561	+		IAI47_16010	0.20	-3.1
3,381,561	+		IAI47_16010	0.20	-1.9
3,381,561	+		IAI47_16010	0.20	-1.1
3,381,561	+		IAI47_16010	0.20	-1.9
3,381,562	-		IAI47_16010	0.21	-1.4
3,381,562	-		IAI47_16010	0.21	-1.4
3,381,562	-		IAI47_16010	0.21	-0.9
3,381,562	-		IAI47_16010	0.21	-1.6
3,381,617	+		IAI47_16010	0.24	-2.8
3,381,617	+		IAI47_16010	0.24	-1.6
3,381,618	-		IAI47_16010	0.25	-2.1
3,381,724	+		IAI47_16010	0.32	-3.5
3,381,724	+		IAI47_16010	0.32	-0.7
3,381,724	+		IAI47_16010	0.32	-1.9
3,381,724	+		IAI47_16010	0.32	-2.0
3,381,724	+		IAI47_16010	0.32	-1.1
3,381,724	+		IAI47_16010	0.32	-2.1
3,381,724	+		IAI47_16010	0.32	-0.9
3,381,724	+		IAI47_16010	0.32	-1.2
3,381,725	-		IAI47_16010	0.32	-0.8
3,381,725	-		IAI47_16010	0.32	-1.0
3,381,725	-		IAI47_16010	0.32	-0.9
3,381,725	-		IAI47_16010	0.32	+1.6
3,381,725	-		IAI47_16010	0.32	-1.1
3,381,725	-		IAI47_16010	0.32	+0.7
3,381,725	-		IAI47_16010	0.32	-1.7
3,381,778	+		IAI47_16010	0.36	-1.1
3,381,778	+		IAI47_16010	0.36	-1.7
3,381,779	-		IAI47_16010	0.36	-2.4
3,381,779	-		IAI47_16010	0.36	-2.1
3,381,804	-		IAI47_16010	0.38	-1.9
3,381,836	+		IAI47_16010	0.40	-3.5
3,381,836	+		IAI47_16010	0.40	-0.6
3,381,864	+		IAI47_16010	0.42	-3.2
3,381,864	+		IAI47_16010	0.42	-2.3
3,381,865	-		IAI47_16010	0.42	-1.1
3,381,865	-		IAI47_16010	0.42	-2.2
3,381,865	-		IAI47_16010	0.42	-4.1
3,381,917	+		IAI47_16010	0.46	-0.9
3,381,917	+		IAI47_16010	0.46	-0.4
3,381,917	+		IAI47_16010	0.46	-0.6
3,381,917	+		IAI47_16010	0.46	-2.0
3,381,917	+		IAI47_16010	0.46	-2.1
3,381,917	+		IAI47_16010	0.46	-2.6
3,381,918	-		IAI47_16010	0.46	-1.9
3,381,918	-		IAI47_16010	0.46	+0.5
3,381,967	+		IAI47_16010	0.49	-1.6
3,381,968	-		IAI47_16010	0.49	-2.9
3,381,983	+		IAI47_16010	0.50	-3.3
3,381,984	-		IAI47_16010	0.51	-1.0
3,381,984	-		IAI47_16010	0.51	-1.1
3,381,984	-		IAI47_16010	0.51	-2.0
3,381,984	-		IAI47_16010	0.51	-1.2
3,381,984	-		IAI47_16010	0.51	-0.0
3,381,993	+		IAI47_16010	0.51	+0.3
3,381,993	+		IAI47_16010	0.51	-1.1
3,382,050	+		IAI47_16010	0.55	-2.9
3,382,050	+		IAI47_16010	0.55	-3.3
3,382,050	+		IAI47_16010	0.55	-1.3
3,382,086	+		IAI47_16010	0.58	-1.4
3,382,086	+		IAI47_16010	0.58	-1.6
3,382,086	+		IAI47_16010	0.58	-2.0
3,382,086	+		IAI47_16010	0.58	-2.5
3,382,086	+		IAI47_16010	0.58	-0.5
3,382,086	+		IAI47_16010	0.58	-0.9
3,382,086	+		IAI47_16010	0.58	-0.9
3,382,087	-		IAI47_16010	0.58	-2.4
3,382,087	-		IAI47_16010	0.58	-3.0
3,382,087	-		IAI47_16010	0.58	-0.2
3,382,087	-		IAI47_16010	0.58	-1.0
3,382,087	-		IAI47_16010	0.58	-2.3
3,382,087	-		IAI47_16010	0.58	-0.3
3,382,087	-		IAI47_16010	0.58	-2.0
3,382,087	-		IAI47_16010	0.58	-3.2
3,382,096	+		IAI47_16010	0.58	+0.1
3,382,097	-		IAI47_16010	0.59	-1.8
3,382,097	-		IAI47_16010	0.59	-0.9
3,382,097	-		IAI47_16010	0.59	-0.1
3,382,242	+		IAI47_16010	0.69	-2.2
3,382,242	+		IAI47_16010	0.69	-1.1
3,382,243	-		IAI47_16010	0.69	-2.5
3,382,265	+		IAI47_16010	0.71	-0.4
3,382,266	-		IAI47_16010	0.71	-1.5