Strain Fitness in Pantoea sp. MT58 around IAI47_16000

Experiment: copper (II) chloride 1 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 1 uM, anaerobic
3,377,612	+				-1.8
3,377,612	+				-0.4
3,377,612	+				-0.5
3,377,612	+				-1.0
3,377,612	+				-0.4
3,377,612	+				-1.5
3,377,612	+				+0.7
3,377,612	+				+0.5
3,377,612	+				-1.2
3,377,612	+				-1.5
3,377,612	-				-0.5
3,377,613	-				+0.3
3,377,613	-				-0.2
3,377,613	-				-2.1
3,377,613	-				-1.6
3,377,613	-				-1.5
3,377,613	-				-1.3
3,377,613	-				-0.2
3,377,613	-				-2.0
3,377,613	-				-1.0
3,377,616	+				+0.4
3,377,616	+				-1.8
3,377,616	+				-0.2
3,377,616	+				-0.9
3,377,616	+				-0.4
3,377,616	+				+0.4
3,377,616	+				-0.9
3,377,617	-				+1.7
3,377,617	-				-1.5
3,377,617	-				-0.1
3,377,617	-				-2.0
3,377,617	-				-0.3
3,377,617	-				+0.0
3,377,617	-				-1.6
3,377,617	-				-1.6
3,377,643	+				-2.0
3,377,644	-				-1.7
3,377,644	-				-0.2
3,377,667	+				-1.6
3,377,756	-				-0.7
3,377,756	-				-0.9
3,377,762	-				-0.8
3,377,801	+				-1.3
3,377,801	+				-2.6
3,377,801	+				+0.7
3,377,802	-				-2.4
3,377,807	+				+1.1
3,377,807	+				+0.1
3,377,808	-				+0.5
3,377,808	-				+1.3
3,377,808	-				+1.6
3,377,808	-				+0.6
3,377,878	+				-0.7
3,377,878	+				-0.2
3,377,879	-				+1.7
3,377,879	-				-0.6
3,377,887	+				-1.7
3,377,888	-				+0.9
3,377,888	-				+0.1
3,377,888	-				+0.6
3,377,893	-				-0.7
3,377,932	-				-0.3
3,377,937	-				-0.1
3,377,951	+				-0.1
3,377,951	+				+0.9
3,377,951	+				+0.6
3,377,952	-				-0.2
3,377,952	-				-0.9
3,377,952	-				+0.1
3,377,992	+				-0.5
3,377,992	+				-0.3
3,377,992	+				-0.4
3,377,993	-				+0.8
3,377,993	-				+1.0
3,377,996	+				-1.2
3,377,996	+				+0.3
3,378,052	+				-0.8
3,378,052	+				+0.5
3,378,053	-				+1.2
3,378,070	+				-0.0
3,378,070	+				+1.6
3,378,070	+				+0.0
3,378,070	+				+0.2
3,378,070	+				-0.4
3,378,071	-				-0.6
3,378,086	-				+1.0
3,378,121	+				+0.2
3,378,121	+				+0.7
3,378,122	-				+1.0
3,378,125	+				+0.3
3,378,140	+				-0.0
3,378,141	-				+0.4
3,378,141	-				+0.0
3,378,155	+				-0.9
3,378,156	-				+0.9
3,378,156	-				-0.5
3,378,156	-				+0.4
3,378,174	+				-0.2
3,378,174	+				-0.6
3,378,212	+				+0.6
3,378,305	+				-0.2
3,378,305	+				+1.0
3,378,306	-				-0.2
3,378,321	+				+0.8
3,378,325	+				+0.3
3,378,326	-				-0.5
3,378,333	+				+1.6
3,378,333	+				+0.6
3,378,333	+				+0.3
3,378,334	-				-1.4
3,378,334	-				-0.0
3,378,334	-				-0.5
3,378,334	-				-0.3
3,378,334	-				+0.3
3,378,358	+				+0.4
3,378,359	-				+0.9
3,378,404	+				-0.3
3,378,404	+				-0.8
3,378,404	+				+2.0
3,378,404	+				+0.0
3,378,404	+				-0.8
3,378,404	+				+0.7
3,378,404	+				-1.5
3,378,404	+				-0.3
3,378,404	+				-1.0
3,378,404	+				+1.2
3,378,404	+				-0.3
3,378,404	+				+0.7
3,378,408	+				+0.7
3,378,408	+				+0.8
3,378,408	+				-0.7
3,378,408	+				-1.5
3,378,408	+				-2.7
3,378,408	+				+1.2
3,378,409	-				-2.4
3,378,409	-				-2.6
3,378,409	-				-2.8
3,378,409	-				-1.4
3,378,409	-				-0.7
3,378,409	-				+0.5
3,378,409	-				-3.2
3,378,409	-				+0.1
3,378,423	+				-0.7
3,378,423	+				-1.5
3,378,426	-				-0.2
3,378,467	+		IAI47_15995	0.33	-0.9
3,378,467	+		IAI47_15995	0.33	-1.0
3,378,470	+		IAI47_15995	0.37	-0.5
3,378,474	-		IAI47_15995	0.42	-1.9
3,378,541	+				-0.7
3,378,571	-				-1.7
3,378,571	-				-0.9
3,378,598	+				+0.6
3,378,598	+				+0.9
3,378,599	-				-1.2
3,378,599	-				-0.5
3,378,608	+				-1.6
3,378,608	+				-2.3
3,378,608	+				-0.9
3,378,608	+				-2.6
3,378,608	+				-3.3
3,378,609	-				-2.2
3,378,609	-				-2.2
3,378,667	+				-1.9
3,378,667	+				-3.0
3,378,667	+				-1.8
3,378,667	+				-1.9
3,378,668	-				-4.1
3,378,736	+				-1.4
3,378,736	+				-2.3
3,378,736	+				-1.8
3,378,736	+				-2.5
3,378,736	+				-2.4
3,378,737	-				-2.5
3,378,737	-				-0.6
3,378,737	-				-1.7
3,378,737	-				-1.7
3,378,800	+		IAI47_16000	0.12	+3.0
3,378,800	+		IAI47_16000	0.12	-1.0
3,378,842	-		IAI47_16000	0.15	-3.7
3,378,851	+		IAI47_16000	0.15	-1.7
3,378,852	-		IAI47_16000	0.15	-1.8
3,378,864	+		IAI47_16000	0.16	-3.4
3,378,864	+		IAI47_16000	0.16	-2.0
3,378,864	+		IAI47_16000	0.16	-2.5
3,378,864	+		IAI47_16000	0.16	-1.0
3,378,864	+		IAI47_16000	0.16	-3.6
3,378,865	-		IAI47_16000	0.16	+1.0
3,378,865	-		IAI47_16000	0.16	-3.2
3,378,865	-		IAI47_16000	0.16	-3.7
3,378,865	-		IAI47_16000	0.16	-0.5
3,378,865	-		IAI47_16000	0.16	-4.5
3,378,896	+		IAI47_16000	0.18	-0.4
3,378,896	+		IAI47_16000	0.18	-2.2
3,378,896	+		IAI47_16000	0.18	-2.4
3,378,902	+		IAI47_16000	0.19	-0.4
3,378,902	+		IAI47_16000	0.19	-1.0
3,378,903	-		IAI47_16000	0.19	-0.9
3,378,903	-		IAI47_16000	0.19	-1.1
3,378,903	-		IAI47_16000	0.19	-1.3
3,378,903	-		IAI47_16000	0.19	-1.6
3,378,903	-		IAI47_16000	0.19	-2.2
3,378,903	-		IAI47_16000	0.19	-1.9
3,378,979	+		IAI47_16000	0.23	-2.1
3,378,979	+		IAI47_16000	0.23	-2.5
3,378,979	+		IAI47_16000	0.23	-2.0
3,378,979	+		IAI47_16000	0.23	-0.6
3,378,979	+		IAI47_16000	0.23	-2.5
3,378,980	-		IAI47_16000	0.24	-1.4
3,378,980	-		IAI47_16000	0.24	-2.4
3,378,980	-		IAI47_16000	0.24	-1.6
3,378,980	-		IAI47_16000	0.24	-3.7
3,378,980	-		IAI47_16000	0.24	-1.4
3,378,983	+		IAI47_16000	0.24	-1.9
3,378,983	+		IAI47_16000	0.24	-3.2
3,378,983	+		IAI47_16000	0.24	-2.0
3,378,983	+		IAI47_16000	0.24	-0.9
3,378,983	+		IAI47_16000	0.24	-1.7
3,378,983	+		IAI47_16000	0.24	-0.6
3,378,983	+		IAI47_16000	0.24	-1.1
3,378,983	+		IAI47_16000	0.24	-1.6
3,378,983	+		IAI47_16000	0.24	-0.4
3,378,983	+		IAI47_16000	0.24	-1.5
3,378,983	+		IAI47_16000	0.24	-3.0
3,378,983	+		IAI47_16000	0.24	-3.3
3,378,983	+		IAI47_16000	0.24	-1.5
3,378,983	+		IAI47_16000	0.24	+0.2
3,378,984	-		IAI47_16000	0.24	-0.1
3,378,984	-		IAI47_16000	0.24	-1.7
3,378,984	-		IAI47_16000	0.24	-2.5
3,378,984	-		IAI47_16000	0.24	-1.8
3,378,984	-		IAI47_16000	0.24	-2.6
3,378,984	-		IAI47_16000	0.24	-0.9
3,378,984	-		IAI47_16000	0.24	-2.4
3,378,984	-		IAI47_16000	0.24	-1.4
3,378,984	-		IAI47_16000	0.24	-1.8
3,378,984	-		IAI47_16000	0.24	-1.4
3,378,984	-		IAI47_16000	0.24	-1.8
3,378,984	-		IAI47_16000	0.24	+0.0
3,378,984	-		IAI47_16000	0.24	-1.0
3,378,984	-		IAI47_16000	0.24	-2.4
3,378,984	-		IAI47_16000	0.24	-2.1
3,379,001	+		IAI47_16000	0.25	+1.0
3,379,001	+		IAI47_16000	0.25	-2.4
3,379,002	-		IAI47_16000	0.25	-3.4
3,379,005	+		IAI47_16000	0.25	+0.1
3,379,005	+		IAI47_16000	0.25	-1.2
3,379,005	+		IAI47_16000	0.25	-1.9
3,379,005	+		IAI47_16000	0.25	-0.6
3,379,005	+		IAI47_16000	0.25	-3.2
3,379,006	-		IAI47_16000	0.25	-1.8
3,379,006	-		IAI47_16000	0.25	-2.6
3,379,047	-		IAI47_16000	0.28	-1.9
3,379,071	-		IAI47_16000	0.29	-1.0
3,379,088	+		IAI47_16000	0.30	-2.1
3,379,131	+		IAI47_16000	0.33	-0.6
3,379,131	+		IAI47_16000	0.33	-3.3
3,379,150	-		IAI47_16000	0.34	-1.4
3,379,150	-		IAI47_16000	0.34	-2.2
3,379,150	-		IAI47_16000	0.34	-2.3
3,379,160	+		IAI47_16000	0.35	-1.2
3,379,161	-		IAI47_16000	0.35	-2.5
3,379,187	+		IAI47_16000	0.37	-1.5
3,379,187	+		IAI47_16000	0.37	-0.2
3,379,187	+		IAI47_16000	0.37	-1.3
3,379,188	-		IAI47_16000	0.37	-2.0
3,379,188	-		IAI47_16000	0.37	-0.5
3,379,188	-		IAI47_16000	0.37	-1.3
3,379,197	-		IAI47_16000	0.37	-1.6
3,379,205	+		IAI47_16000	0.38	-0.2
3,379,206	-		IAI47_16000	0.38	-1.0
3,379,206	-		IAI47_16000	0.38	-1.1
3,379,218	-		IAI47_16000	0.39	-2.4
3,379,235	+		IAI47_16000	0.40	+0.8
3,379,307	-		IAI47_16000	0.44	-1.3
3,379,355	+		IAI47_16000	0.48	-2.9
3,379,356	-		IAI47_16000	0.48	-1.5
3,379,356	-		IAI47_16000	0.48	-2.1
3,379,381	+		IAI47_16000	0.49	-3.2
3,379,381	+		IAI47_16000	0.49	-1.4
3,379,381	+		IAI47_16000	0.49	-0.8
3,379,381	+		IAI47_16000	0.49	-3.4
3,379,381	+		IAI47_16000	0.49	-1.4
3,379,381	+		IAI47_16000	0.49	-2.7
3,379,381	+		IAI47_16000	0.49	-0.3
3,379,382	-		IAI47_16000	0.49	-2.4
3,379,382	-		IAI47_16000	0.49	-3.0
3,379,382	-		IAI47_16000	0.49	+0.0
3,379,392	-		IAI47_16000	0.50	-3.7
3,379,410	+		IAI47_16000	0.51	-2.0
3,379,415	+		IAI47_16000	0.51	-0.1
3,379,463	+		IAI47_16000	0.54	-1.7
3,379,464	-		IAI47_16000	0.55	-2.3
3,379,464	-		IAI47_16000	0.55	-1.7
3,379,464	-		IAI47_16000	0.55	-2.0
3,379,505	+		IAI47_16000	0.57	-2.6
3,379,505	+		IAI47_16000	0.57	-1.4
3,379,505	+		IAI47_16000	0.57	+0.0
3,379,574	-		IAI47_16000	0.62	-0.6
3,379,574	-		IAI47_16000	0.62	-0.1
3,379,577	+		IAI47_16000	0.62	-1.4
3,379,577	+		IAI47_16000	0.62	-0.4
3,379,577	+		IAI47_16000	0.62	-3.1
3,379,578	-		IAI47_16000	0.62	-0.6
3,379,631	+		IAI47_16000	0.65	-1.2
3,379,632	-		IAI47_16000	0.65	-0.9
3,379,647	+		IAI47_16000	0.66	-1.1
3,379,648	-		IAI47_16000	0.66	-0.6
3,379,662	+		IAI47_16000	0.67	-1.6
3,379,663	-		IAI47_16000	0.67	-2.1
3,379,674	-		IAI47_16000	0.68	-1.0
3,379,680	+		IAI47_16000	0.68	-0.9
3,379,680	+		IAI47_16000	0.68	-1.2
3,379,681	-		IAI47_16000	0.68	-0.8
3,379,681	-		IAI47_16000	0.68	-1.3
3,379,681	-		IAI47_16000	0.68	-2.9
3,379,681	-		IAI47_16000	0.68	-0.3
3,379,681	-		IAI47_16000	0.68	-0.6
3,379,728	+		IAI47_16000	0.71	-1.6
3,379,729	-		IAI47_16000	0.71	-1.6
3,379,865	+		IAI47_16000	0.80	-3.1
3,379,866	-		IAI47_16000	0.80	-0.5
3,379,908	+		IAI47_16000	0.83	+0.0
3,379,909	-		IAI47_16000	0.83	-2.2
3,379,920	-		IAI47_16000	0.84	-0.2
3,379,956	+		IAI47_16000	0.86	+0.0
3,379,957	-		IAI47_16000	0.86	-2.4
3,379,957	-		IAI47_16000	0.86	-1.2
3,379,970	+		IAI47_16000	0.87	-1.6
3,380,014	+		IAI47_16000	0.90	+0.5
3,380,014	+		IAI47_16000	0.90	-0.6
3,380,014	+		IAI47_16000	0.90	-1.8
3,380,014	+		IAI47_16000	0.90	-0.1
3,380,015	-		IAI47_16000	0.90	-1.8
3,380,015	-		IAI47_16000	0.90	-1.9
3,380,015	-		IAI47_16000	0.90	-0.8
3,380,015	-		IAI47_16000	0.90	-0.1
3,380,015	-		IAI47_16000	0.90	-2.2
3,380,019	+				-0.6
3,380,020	-				-2.0
3,380,105	+				+0.4
3,380,105	+				-1.7
3,380,105	+				-1.9
3,380,106	-				-0.1
3,380,106	-				-1.0
3,380,106	-				-2.4
3,380,106	-				-1.2
3,380,106	-				-1.6
3,380,106	-				-0.0
3,380,150	+				+0.3
3,380,150	+				-0.6
3,380,150	+				-0.0
3,380,150	+				-0.9
3,380,170	+				-1.7
3,380,171	-				-1.5
3,380,171	-				-0.7
3,380,172	+				-0.9
3,380,172	+				-0.9
3,380,172	+				+0.1
3,380,172	+				-2.0
3,380,173	-				-2.3
3,380,173	-				-1.4
3,380,173	-				-1.5
3,380,194	+				+0.2
3,380,205	+				-1.8
3,380,281	+				-2.7
3,380,281	+				-1.4
3,380,282	-				-1.5
3,380,282	-				-1.9
3,380,282	-				-1.1
3,380,293	+		IAI47_16005	0.11	-0.5
3,380,294	-		IAI47_16005	0.11	-1.1
3,380,294	-		IAI47_16005	0.11	-0.1
3,380,303	+		IAI47_16005	0.12	-1.0
3,380,304	-		IAI47_16005	0.12	-1.9
3,380,304	-		IAI47_16005	0.12	-2.0
3,380,304	-		IAI47_16005	0.12	-2.5
3,380,427	+		IAI47_16005	0.23	-1.8
3,380,428	-		IAI47_16005	0.23	-1.7
3,380,428	-		IAI47_16005	0.23	-0.9
3,380,482	+		IAI47_16005	0.28	-2.4
3,380,482	+		IAI47_16005	0.28	-2.6
3,380,482	+		IAI47_16005	0.28	-1.9
3,380,483	-		IAI47_16005	0.28	-0.5
3,380,494	+		IAI47_16005	0.29	-1.2
3,380,516	+		IAI47_16005	0.31	-2.8
3,380,517	-		IAI47_16005	0.31	-2.8
3,380,517	-		IAI47_16005	0.31	-0.8
3,380,609	+		IAI47_16005	0.40	-3.1
3,380,609	+		IAI47_16005	0.40	+0.6
3,380,609	+		IAI47_16005	0.40	-2.1
3,380,610	-		IAI47_16005	0.40	-1.1
3,380,610	-		IAI47_16005	0.40	-1.3
3,380,610	-		IAI47_16005	0.40	-0.9
3,380,610	-		IAI47_16005	0.40	-1.6
3,380,610	-		IAI47_16005	0.40	-2.8
3,380,675	+		IAI47_16005	0.46	-1.1
3,380,675	+		IAI47_16005	0.46	-2.2
3,380,675	+		IAI47_16005	0.46	-1.8
3,380,675	+		IAI47_16005	0.46	-2.1
3,380,676	-		IAI47_16005	0.46	-2.3
3,380,758	+		IAI47_16005	0.53	-2.3
3,380,759	-		IAI47_16005	0.53	+0.2
3,380,764	+		IAI47_16005	0.54	+0.9
3,380,764	+		IAI47_16005	0.54	-2.3
3,380,764	+		IAI47_16005	0.54	-2.2
3,380,764	+		IAI47_16005	0.54	-2.7
3,380,765	-		IAI47_16005	0.54	-1.3
3,380,765	-		IAI47_16005	0.54	-0.5
3,380,823	-		IAI47_16005	0.59	-0.9
3,380,849	+		IAI47_16005	0.62	-1.1
3,380,849	+		IAI47_16005	0.62	-1.3
3,380,849	+		IAI47_16005	0.62	-0.8
3,380,849	+		IAI47_16005	0.62	-1.3
3,380,849	+		IAI47_16005	0.62	-1.5
3,380,849	+		IAI47_16005	0.62	+0.4
3,380,849	+		IAI47_16005	0.62	-1.0
3,380,849	+		IAI47_16005	0.62	-1.8
3,380,849	+		IAI47_16005	0.62	-2.3
3,380,849	+		IAI47_16005	0.62	-1.3
3,380,850	-		IAI47_16005	0.62	-1.4
3,380,850	-		IAI47_16005	0.62	-1.0
3,380,850	-		IAI47_16005	0.62	-1.6
3,380,850	-		IAI47_16005	0.62	-2.1
3,380,850	-		IAI47_16005	0.62	-2.3
3,380,850	-		IAI47_16005	0.62	-1.4
3,380,850	-		IAI47_16005	0.62	+0.1
3,380,850	-		IAI47_16005	0.62	-1.5
3,380,850	-		IAI47_16005	0.62	+0.0
3,380,850	-		IAI47_16005	0.62	-2.1
3,380,971	+		IAI47_16005	0.73	-2.6
3,381,058	+		IAI47_16005	0.81	-3.5
3,381,058	+		IAI47_16005	0.81	-1.6
3,381,059	-		IAI47_16005	0.81	-1.6
3,381,059	-		IAI47_16005	0.81	-0.5
3,381,108	-		IAI47_16005	0.85	-1.7
3,381,139	+		IAI47_16005	0.88	-1.3
3,381,139	+		IAI47_16005	0.88	-1.4