Strain Fitness in Pantoea sp. MT58 around IAI47_15115

Experiment: copper (II) chloride 1 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 1 uM, anaerobic
3,185,448	+		IAI47_15110	0.25	+1.1
3,185,448	+		IAI47_15110	0.25	+0.3
3,185,449	-		IAI47_15110	0.25	+0.5
3,185,449	-		IAI47_15110	0.25	+1.2
3,185,454	+		IAI47_15110	0.26	+0.2
3,185,454	+		IAI47_15110	0.26	-0.0
3,185,454	+		IAI47_15110	0.26	+0.4
3,185,454	+		IAI47_15110	0.26	-1.0
3,185,455	-		IAI47_15110	0.26	+1.2
3,185,526	+		IAI47_15110	0.36	+0.2
3,185,526	+		IAI47_15110	0.36	-1.8
3,185,526	+		IAI47_15110	0.36	-0.1
3,185,541	+		IAI47_15110	0.38	-0.0
3,185,606	+		IAI47_15110	0.46	+1.0
3,185,606	+		IAI47_15110	0.46	+1.9
3,185,607	-		IAI47_15110	0.47	-1.8
3,185,607	-		IAI47_15110	0.47	+0.3
3,185,622	+		IAI47_15110	0.49	+0.7
3,185,686	-		IAI47_15110	0.57	-0.2
3,185,691	+		IAI47_15110	0.58	-1.0
3,185,721	+		IAI47_15110	0.62	-0.5
3,185,721	+		IAI47_15110	0.62	+0.7
3,185,722	-		IAI47_15110	0.62	-0.9
3,185,980	-				+0.4
3,185,980	-				+0.5
3,185,980	-				+1.0
3,185,980	-				-0.2
3,185,999	-				+1.3
3,185,999	-				+1.0
3,186,002	+				+0.5
3,186,005	+				+0.1
3,186,025	-				-0.9
3,186,025	-				-0.4
3,186,025	-				-0.3
3,186,034	+				+0.7
3,186,035	-				+0.2
3,186,062	+				-0.1
3,186,063	-				-1.1
3,186,064	+				-0.2
3,186,064	+				+0.8
3,186,065	-				-0.7
3,186,079	-				+0.7
3,186,086	-				+0.8
3,186,107	+				-3.0
3,186,108	-				+0.4
3,186,108	-				-0.4
3,186,111	+				+0.6
3,186,111	+				-1.2
3,186,111	+				+1.2
3,186,111	+				+0.7
3,186,111	+				+0.2
3,186,112	-				+0.7
3,186,112	-				+0.2
3,186,112	-				-0.1
3,186,117	+				+0.0
3,186,209	+				+0.7
3,186,210	-				-0.6
3,186,221	+				-0.8
3,186,221	+				-0.3
3,186,221	+				+0.3
3,186,221	+				-0.3
3,186,221	+				-0.8
3,186,221	+				+0.1
3,186,221	+				+0.1
3,186,222	-				+0.2
3,186,222	-				+0.1
3,186,222	-				+1.5
3,186,222	-				-0.4
3,186,222	-				+1.1
3,186,222	-				+0.2
3,186,277	+				+0.2
3,186,278	-				+1.0
3,186,360	-				+0.4
3,186,373	-				+0.8
3,186,373	-				+1.1
3,186,373	-				-0.0
3,186,373	-				-0.2
3,186,396	+				+0.6
3,186,396	+				+0.6
3,186,397	-				-0.3
3,186,398	+				-2.5
3,186,398	+				-2.0
3,186,398	+				-1.2
3,186,398	+				+1.3
3,186,398	+				+0.7
3,186,399	-				-2.8
3,186,399	-				-1.6
3,186,399	-				-1.2
3,186,399	-				-2.6
3,186,518	+		IAI47_15115	0.13	-0.4
3,186,519	-		IAI47_15115	0.13	-1.9
3,186,519	-		IAI47_15115	0.13	-1.3
3,186,519	-		IAI47_15115	0.13	+0.2
3,186,561	+		IAI47_15115	0.16	-1.0
3,186,561	+		IAI47_15115	0.16	-0.5
3,186,567	+		IAI47_15115	0.17	-0.5
3,186,568	-		IAI47_15115	0.17	-1.8
3,186,568	-		IAI47_15115	0.17	-1.7
3,186,570	+		IAI47_15115	0.17	+0.2
3,186,582	+		IAI47_15115	0.18	-2.0
3,186,582	+		IAI47_15115	0.18	-1.4
3,186,582	+		IAI47_15115	0.18	-1.6
3,186,582	+		IAI47_15115	0.18	-1.2
3,186,583	-		IAI47_15115	0.18	-0.3
3,186,583	-		IAI47_15115	0.18	+0.2
3,186,583	-		IAI47_15115	0.18	-1.4
3,186,610	-		IAI47_15115	0.20	-1.5
3,186,651	+		IAI47_15115	0.23	+0.4
3,186,652	-		IAI47_15115	0.23	-2.7
3,186,657	+		IAI47_15115	0.24	-1.6
3,186,658	-		IAI47_15115	0.24	-0.8
3,186,658	-		IAI47_15115	0.24	+1.0
3,186,658	-		IAI47_15115	0.24	-1.2
3,186,686	+		IAI47_15115	0.26	-1.0
3,186,686	+		IAI47_15115	0.26	-1.4
3,186,686	+		IAI47_15115	0.26	-2.0
3,186,686	+		IAI47_15115	0.26	-0.9
3,186,686	+		IAI47_15115	0.26	-2.1
3,186,686	+		IAI47_15115	0.26	-0.3
3,186,687	-		IAI47_15115	0.26	-2.1
3,186,687	-		IAI47_15115	0.26	-1.4
3,186,687	-		IAI47_15115	0.26	-1.3
3,186,687	-		IAI47_15115	0.26	+0.1
3,186,687	-		IAI47_15115	0.26	-0.7
3,186,852	+		IAI47_15115	0.39	-1.0
3,186,853	-		IAI47_15115	0.39	-1.4
3,186,853	-		IAI47_15115	0.39	-2.4
3,186,853	-		IAI47_15115	0.39	-2.0
3,186,853	-		IAI47_15115	0.39	-1.7
3,186,929	+		IAI47_15115	0.46	+0.7
3,186,929	+		IAI47_15115	0.46	+0.6
3,186,929	+		IAI47_15115	0.46	-0.6
3,186,929	+		IAI47_15115	0.46	-0.6
3,186,930	-		IAI47_15115	0.46	-0.8
3,186,930	-		IAI47_15115	0.46	-1.0
3,186,930	-		IAI47_15115	0.46	-1.8
3,186,930	-		IAI47_15115	0.46	-1.4
3,186,930	-		IAI47_15115	0.46	-1.9
3,186,930	-		IAI47_15115	0.46	-1.3
3,186,934	-		IAI47_15115	0.46	-0.0
3,186,934	-		IAI47_15115	0.46	-0.7
3,186,934	-		IAI47_15115	0.46	-1.8
3,186,993	+		IAI47_15115	0.51	-0.9
3,186,993	+		IAI47_15115	0.51	-0.9
3,186,993	+		IAI47_15115	0.51	-2.4
3,186,994	-		IAI47_15115	0.51	-3.7
3,187,034	+		IAI47_15115	0.54	-1.8
3,187,102	+		IAI47_15115	0.59	-1.4
3,187,191	+		IAI47_15115	0.66	-0.6
3,187,243	-		IAI47_15115	0.71	-1.9
3,187,256	+		IAI47_15115	0.72	+0.4
3,187,256	+		IAI47_15115	0.72	-1.5
3,187,257	-		IAI47_15115	0.72	-1.7
3,187,257	-		IAI47_15115	0.72	+0.7
3,187,333	+		IAI47_15115	0.78	-1.2
3,187,333	+		IAI47_15115	0.78	+1.0
3,187,334	-		IAI47_15115	0.78	-2.2
3,187,334	-		IAI47_15115	0.78	-2.2
3,187,408	-		IAI47_15115	0.84	-0.5
3,187,423	+		IAI47_15115	0.85	-0.9
3,187,424	-		IAI47_15115	0.85	-0.5
3,187,424	-		IAI47_15115	0.85	-0.2
3,187,426	+		IAI47_15115	0.85	+0.1
3,187,462	+		IAI47_15115	0.88	-2.4
3,187,570	-				-2.9
3,187,571	+				-0.8
3,187,571	+				-0.7
3,187,571	+				+0.6
3,187,571	+				-0.8
3,187,572	-				-1.4
3,187,572	-				-1.0
3,187,623	+				-0.8
3,187,624	-				+0.3
3,187,666	-				-1.8
3,187,666	-				-1.6
3,187,671	+				-1.8
3,187,672	-				+1.0
3,187,672	-				-1.8
3,187,672	-				-0.2
3,187,861	+		IAI47_15120	0.22	-1.8
3,187,981	+		IAI47_15120	0.33	-0.3
3,187,982	-		IAI47_15120	0.33	-2.5
3,187,982	-		IAI47_15120	0.33	-0.4
3,188,077	+		IAI47_15120	0.41	-1.4
3,188,149	+		IAI47_15120	0.48	-0.3
3,188,149	+		IAI47_15120	0.48	-1.4
3,188,149	+		IAI47_15120	0.48	-0.7
3,188,149	+		IAI47_15120	0.48	-2.0
3,188,149	+		IAI47_15120	0.48	+0.1
3,188,150	-		IAI47_15120	0.48	-1.0
3,188,150	-		IAI47_15120	0.48	-0.9
3,188,150	-		IAI47_15120	0.48	-2.2
3,188,150	-		IAI47_15120	0.48	-1.8
3,188,150	-		IAI47_15120	0.48	+0.7
3,188,150	-		IAI47_15120	0.48	-2.3
3,188,150	-		IAI47_15120	0.48	-1.7
3,188,150	-		IAI47_15120	0.48	-2.6
3,188,150	-		IAI47_15120	0.48	-0.4
3,188,150	-		IAI47_15120	0.48	+0.2
3,188,341	+		IAI47_15120	0.65	-1.3
3,188,341	+		IAI47_15120	0.65	-2.7
3,188,341	+		IAI47_15120	0.65	-2.2
3,188,341	+		IAI47_15120	0.65	-1.4
3,188,341	+		IAI47_15120	0.65	+0.2
3,188,342	-		IAI47_15120	0.65	-0.6
3,188,342	-		IAI47_15120	0.65	-0.8
3,188,342	-		IAI47_15120	0.65	-1.5
3,188,434	+		IAI47_15120	0.74	-1.7
3,188,434	+		IAI47_15120	0.74	-0.3
3,188,434	+		IAI47_15120	0.74	-1.4
3,188,434	+		IAI47_15120	0.74	-1.4
3,188,441	-		IAI47_15120	0.74	-1.7
3,188,441	-		IAI47_15120	0.74	+0.8
3,188,441	-		IAI47_15120	0.74	-0.1
3,188,445	+		IAI47_15120	0.75	+0.3
3,188,445	+		IAI47_15120	0.75	-1.7
3,188,445	+		IAI47_15120	0.75	-0.9
3,188,445	+		IAI47_15120	0.75	-0.9
3,188,445	+		IAI47_15120	0.75	-0.2
3,188,446	-		IAI47_15120	0.75	-2.6
3,188,446	-		IAI47_15120	0.75	-1.8
3,188,449	+		IAI47_15120	0.75	-3.2
3,188,450	-		IAI47_15120	0.75	-0.2
3,188,456	+		IAI47_15120	0.76	-1.4
3,188,457	-		IAI47_15120	0.76	-2.8
3,188,457	-		IAI47_15120	0.76	-1.2