Strain Fitness in Pantoea sp. MT58 around IAI47_12705

Experiment: copper (II) chloride 1 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 1 uM, anaerobic
2,672,306	+		IAI47_12695	0.74	+0.6
2,672,307	-		IAI47_12695	0.74	-2.0
2,672,371	+		IAI47_12695	0.79	-2.9
2,672,371	+		IAI47_12695	0.79	+1.6
2,672,371	+		IAI47_12695	0.79	-0.6
2,672,371	+		IAI47_12695	0.79	-0.5
2,672,371	+		IAI47_12695	0.79	-2.6
2,672,371	+		IAI47_12695	0.79	+0.5
2,672,371	+		IAI47_12695	0.79	+0.0
2,672,372	-		IAI47_12695	0.79	-0.2
2,672,372	-		IAI47_12695	0.79	+0.8
2,672,372	-		IAI47_12695	0.79	-0.1
2,672,372	-		IAI47_12695	0.79	-0.4
2,672,372	-		IAI47_12695	0.79	-0.3
2,672,372	-		IAI47_12695	0.79	+0.5
2,672,375	+		IAI47_12695	0.80	-0.6
2,672,375	+		IAI47_12695	0.80	+1.1
2,672,376	-		IAI47_12695	0.80	+0.4
2,672,376	-		IAI47_12695	0.80	+0.4
2,672,376	-		IAI47_12695	0.80	+1.1
2,672,401	+		IAI47_12695	0.82	+0.1
2,672,402	-		IAI47_12695	0.82	+0.1
2,672,402	-		IAI47_12695	0.82	-2.0
2,672,415	+		IAI47_12695	0.83	+0.9
2,672,415	+		IAI47_12695	0.83	-0.5
2,672,415	+		IAI47_12695	0.83	+1.2
2,672,415	+		IAI47_12695	0.83	+0.9
2,672,416	-		IAI47_12695	0.83	-0.4
2,672,453	+		IAI47_12695	0.87	-0.1
2,672,454	-		IAI47_12695	0.87	+0.0
2,672,454	-		IAI47_12695	0.87	-0.8
2,672,454	-		IAI47_12695	0.87	+0.4
2,672,454	-		IAI47_12695	0.87	+0.1
2,672,556	+				-0.6
2,672,557	-				+0.2
2,672,557	-				-1.0
2,672,563	+				-0.4
2,672,563	+				+0.1
2,672,563	+				-2.6
2,672,563	+				+0.1
2,672,564	-				+0.3
2,672,564	-				-0.3
2,672,564	-				+0.5
2,672,564	-				+0.3
2,672,564	-				-0.7
2,672,569	+				+0.7
2,672,569	+				+0.4
2,672,569	+				-1.0
2,672,570	-				-1.4
2,672,743	+		IAI47_12700	0.26	+0.8
2,672,743	+		IAI47_12700	0.26	+0.4
2,672,744	-		IAI47_12700	0.27	+1.1
2,672,744	-		IAI47_12700	0.27	-0.8
2,672,744	-		IAI47_12700	0.27	-0.1
2,672,797	+		IAI47_12700	0.36	+0.9
2,672,804	+		IAI47_12700	0.38	+1.5
2,672,841	+		IAI47_12700	0.44	+0.2
2,672,841	+		IAI47_12700	0.44	-0.2
2,672,841	+		IAI47_12700	0.44	-0.2
2,672,841	+		IAI47_12700	0.44	+0.4
2,672,841	+		IAI47_12700	0.44	+0.2
2,672,841	+		IAI47_12700	0.44	+0.1
2,672,841	+		IAI47_12700	0.44	+0.6
2,672,841	+		IAI47_12700	0.44	+0.3
2,672,841	+		IAI47_12700	0.44	+1.4
2,672,842	-		IAI47_12700	0.45	-0.2
2,672,842	-		IAI47_12700	0.45	+0.4
2,672,842	-		IAI47_12700	0.45	-0.5
2,672,842	-		IAI47_12700	0.45	-1.9
2,672,842	-		IAI47_12700	0.45	-0.8
2,672,842	-		IAI47_12700	0.45	-0.2
2,672,842	-		IAI47_12700	0.45	-0.4
2,672,842	-		IAI47_12700	0.45	+0.6
2,672,863	+		IAI47_12700	0.48	+1.2
2,672,906	+		IAI47_12700	0.56	+0.1
2,672,906	+		IAI47_12700	0.56	+1.8
2,672,906	+		IAI47_12700	0.56	+0.8
2,672,907	-		IAI47_12700	0.57	-0.3
2,672,971	-		IAI47_12700	0.68	+1.2
2,672,971	-		IAI47_12700	0.68	-0.1
2,672,971	-		IAI47_12700	0.68	+0.5
2,672,973	+		IAI47_12700	0.69	-0.1
2,672,973	+		IAI47_12700	0.69	+0.2
2,672,973	+		IAI47_12700	0.69	-1.4
2,672,973	+		IAI47_12700	0.69	-0.5
2,672,974	-		IAI47_12700	0.69	-2.9
2,672,974	-		IAI47_12700	0.69	+2.2
2,673,043	-		IAI47_12700	0.82	+0.1
2,673,061	+		IAI47_12700	0.85	-1.0
2,673,062	-		IAI47_12700	0.85	-0.2
2,673,108	+				+0.8
2,673,121	+				+0.6
2,673,154	+				+0.8
2,673,155	-				+0.6
2,673,155	-				-0.1
2,673,158	+				+0.4
2,673,239	+				-0.4
2,673,239	+				+0.8
2,673,239	+				+0.0
2,673,241	+				-0.3
2,673,259	-				+1.5
2,673,262	+				-2.0
2,673,263	-				+0.4
2,673,263	-				-0.3
2,673,300	+				-0.1
2,673,301	-				-0.7
2,673,301	-				-1.5
2,673,301	-				-0.3
2,673,301	-				-0.1
2,673,312	+				-0.6
2,673,312	+				-1.4
2,673,313	-				-1.7
2,673,313	-				-1.3
2,673,318	+				-0.4
2,673,319	-				-0.7
2,673,323	-				-0.6
2,673,343	-				-1.9
2,673,364	+				-2.0
2,673,364	+				-1.5
2,673,364	+				-1.3
2,673,365	-				-0.8
2,673,365	-				-1.3
2,673,365	-				-0.5
2,673,365	-				-0.7
2,673,429	+		IAI47_12705	0.13	-0.8
2,673,530	+		IAI47_12705	0.23	-3.7
2,673,531	-		IAI47_12705	0.23	-0.5
2,673,567	+		IAI47_12705	0.27	-1.4
2,673,568	-		IAI47_12705	0.27	-2.9
2,673,568	-		IAI47_12705	0.27	-4.0
2,673,568	-		IAI47_12705	0.27	-2.0
2,673,568	-		IAI47_12705	0.27	-1.0
2,673,580	-		IAI47_12705	0.28	-1.8
2,673,580	-		IAI47_12705	0.28	-1.1
2,673,580	-		IAI47_12705	0.28	-0.8
2,673,580	-		IAI47_12705	0.28	-1.0
2,673,604	+		IAI47_12705	0.31	-1.3
2,673,625	+		IAI47_12705	0.33	-2.8
2,673,625	+		IAI47_12705	0.33	-0.8
2,673,674	+		IAI47_12705	0.37	+0.0
2,673,674	+		IAI47_12705	0.37	-0.2
2,673,674	+		IAI47_12705	0.37	-0.3
2,673,674	+		IAI47_12705	0.37	-0.1
2,673,675	-		IAI47_12705	0.38	-0.6
2,673,675	-		IAI47_12705	0.38	-2.4
2,673,675	-		IAI47_12705	0.38	-2.5
2,673,678	+		IAI47_12705	0.38	-0.1
2,673,678	+		IAI47_12705	0.38	-1.0
2,673,678	+		IAI47_12705	0.38	-2.9
2,673,679	-		IAI47_12705	0.38	-1.6
2,673,679	-		IAI47_12705	0.38	-1.3
2,673,789	+		IAI47_12705	0.49	-0.7
2,673,790	-		IAI47_12705	0.49	+0.7
2,673,790	-		IAI47_12705	0.49	-0.6
2,673,801	+		IAI47_12705	0.50	-0.6
2,673,801	+		IAI47_12705	0.50	-1.0
2,673,802	-		IAI47_12705	0.50	+0.4
2,673,802	-		IAI47_12705	0.50	+0.0
2,673,804	-		IAI47_12705	0.50	-0.6
2,673,804	-		IAI47_12705	0.50	-1.6
2,673,804	-		IAI47_12705	0.50	-1.7
2,673,819	-		IAI47_12705	0.52	-1.4
2,673,819	-		IAI47_12705	0.52	-0.5
2,673,842	+		IAI47_12705	0.54	-0.5
2,673,842	+		IAI47_12705	0.54	-1.8
2,673,843	-		IAI47_12705	0.54	-1.4
2,673,843	-		IAI47_12705	0.54	-1.5
2,673,870	+		IAI47_12705	0.57	-0.9
2,673,870	+		IAI47_12705	0.57	-0.2
2,673,870	+		IAI47_12705	0.57	-2.2
2,673,871	-		IAI47_12705	0.57	-2.9
2,673,910	-		IAI47_12705	0.61	+0.4
2,673,958	-		IAI47_12705	0.66	-0.1
2,673,960	+		IAI47_12705	0.66	+0.2
2,673,960	+		IAI47_12705	0.66	-0.4
2,673,960	+		IAI47_12705	0.66	+1.8
2,673,960	+		IAI47_12705	0.66	-0.9
2,673,960	+		IAI47_12705	0.66	-0.8
2,673,961	-		IAI47_12705	0.66	-0.5
2,673,961	-		IAI47_12705	0.66	+0.2
2,673,961	-		IAI47_12705	0.66	-0.9
2,673,961	-		IAI47_12705	0.66	-0.3
2,673,978	+		IAI47_12705	0.68	-0.8
2,674,017	+		IAI47_12705	0.71	-0.9
2,674,018	-		IAI47_12705	0.72	-2.2
2,674,018	-		IAI47_12705	0.72	-0.6
2,674,018	-		IAI47_12705	0.72	-1.3
2,674,018	-		IAI47_12705	0.72	-0.8
2,674,018	-		IAI47_12705	0.72	-2.4
2,674,095	+		IAI47_12705	0.79	-0.2
2,674,095	+		IAI47_12705	0.79	-1.5
2,674,095	+		IAI47_12705	0.79	+0.1
2,674,095	+		IAI47_12705	0.79	-0.4
2,674,096	-		IAI47_12705	0.79	-1.7
2,674,096	-		IAI47_12705	0.79	-1.7
2,674,096	-		IAI47_12705	0.79	-1.9
2,674,096	-		IAI47_12705	0.79	-0.2
2,674,096	-		IAI47_12705	0.79	-0.7
2,674,144	-		IAI47_12705	0.84	-1.5
2,674,158	+		IAI47_12705	0.85	-0.9
2,674,159	-		IAI47_12705	0.85	-0.7
2,674,159	-		IAI47_12705	0.85	-0.2
2,674,159	-		IAI47_12705	0.85	-1.5
2,674,165	-		IAI47_12705	0.86	+0.4
2,674,165	-		IAI47_12705	0.86	-0.7
2,674,193	+		IAI47_12705	0.89	-1.2
2,674,221	+				-0.2
2,674,221	+				-2.2
2,674,222	-				-2.1
2,674,222	-				+0.7
2,674,222	-				-1.8
2,674,228	+				-1.7
2,674,228	+				-1.5
2,674,229	-				-1.6
2,674,229	-				-0.9
2,674,229	-				-2.4
2,674,229	-				+0.6
2,674,293	+				-1.5
2,674,293	+				-2.0
2,674,294	-				-3.2
2,674,294	-				+0.2
2,674,299	-				-1.3
2,674,299	-				-0.5
2,674,371	+				+0.5
2,674,371	+				-1.1
2,674,372	-				+0.2
2,674,372	-				+0.4
2,674,392	+				+0.5
2,674,393	-				+0.7
2,674,442	-				-0.3
2,674,492	+				-1.3
2,674,492	+				-1.5
2,674,493	-				+0.5
2,674,493	-				+0.4