Experiment: copper (II) chloride 1 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_08990 and IAI47_09000 are separated by 391 nucleotides IAI47_09000 and IAI47_09005 are separated by 40 nucleotides IAI47_09005 and IAI47_09010 are separated by 144 nucleotides IAI47_09010 and IAI47_09015 are separated by 55 nucleotides IAI47_09015 and IAI47_09020 are separated by 96 nucleotides
IAI47_08990: IAI47_08990 - exodeoxyribonuclease III, at 1,900,370 to 1,901,176
_08990
IAI47_09000: IAI47_09000 - tRNA-Tyr, at 1,901,568 to 1,901,652
_09000
IAI47_09005: IAI47_09005 - tRNA-Tyr, at 1,901,693 to 1,901,777
_09005
IAI47_09010: IAI47_09010 - formyltetrahydrofolate deformylase, at 1,901,922 to 1,902,770
_09010
IAI47_09015: IAI47_09015 - YchJ family protein, at 1,902,826 to 1,903,281
_09015
IAI47_09020: IAI47_09020 - patatin-like phospholipase RssA, at 1,903,378 to 1,904,283
_09020
Position (kb) 1901
1902
1903 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1900.990 kb on - strand, within IAI47_08990 at 1900.990 kb on - strand, within IAI47_08990 at 1901.010 kb on + strand, within IAI47_08990 at 1901.010 kb on + strand, within IAI47_08990 at 1901.010 kb on + strand, within IAI47_08990 at 1901.010 kb on + strand, within IAI47_08990 at 1901.011 kb on - strand, within IAI47_08990 at 1901.011 kb on - strand, within IAI47_08990 at 1901.159 kb on - strand at 1901.203 kb on + strand at 1901.226 kb on + strand at 1901.227 kb on - strand at 1901.321 kb on - strand at 1901.390 kb on + strand at 1901.417 kb on + strand at 1901.658 kb on + strand at 1901.659 kb on - strand at 1901.659 kb on - strand at 1901.659 kb on - strand at 1901.659 kb on - strand at 1901.659 kb on - strand at 1901.659 kb on - strand at 1901.659 kb on - strand at 1901.659 kb on - strand at 1901.659 kb on - strand at 1901.660 kb on + strand at 1901.660 kb on + strand at 1901.660 kb on + strand at 1901.660 kb on + strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.661 kb on - strand at 1901.674 kb on - strand at 1901.674 kb on - strand at 1901.674 kb on - strand at 1901.800 kb on - strand at 1901.816 kb on + strand at 1901.816 kb on + strand at 1901.816 kb on + strand at 1901.817 kb on - strand at 1901.817 kb on - strand at 1901.817 kb on - strand at 1901.836 kb on + strand at 1901.837 kb on - strand at 1901.837 kb on - strand at 1901.924 kb on - strand at 1901.924 kb on - strand at 1901.947 kb on + strand at 1902.043 kb on + strand, within IAI47_09010 at 1902.043 kb on + strand, within IAI47_09010 at 1902.043 kb on + strand, within IAI47_09010 at 1902.044 kb on - strand, within IAI47_09010 at 1902.044 kb on - strand, within IAI47_09010 at 1902.109 kb on + strand, within IAI47_09010 at 1902.110 kb on - strand, within IAI47_09010 at 1902.110 kb on - strand, within IAI47_09010 at 1902.148 kb on + strand, within IAI47_09010 at 1902.148 kb on + strand, within IAI47_09010 at 1902.149 kb on - strand, within IAI47_09010 at 1902.149 kb on - strand, within IAI47_09010 at 1902.149 kb on - strand, within IAI47_09010 at 1902.149 kb on - strand, within IAI47_09010 at 1902.203 kb on + strand, within IAI47_09010 at 1902.203 kb on + strand, within IAI47_09010 at 1902.204 kb on - strand, within IAI47_09010 at 1902.204 kb on - strand, within IAI47_09010 at 1902.257 kb on + strand, within IAI47_09010 at 1902.258 kb on - strand, within IAI47_09010 at 1902.258 kb on - strand, within IAI47_09010 at 1902.258 kb on - strand, within IAI47_09010 at 1902.258 kb on - strand, within IAI47_09010 at 1902.259 kb on + strand, within IAI47_09010 at 1902.259 kb on + strand, within IAI47_09010 at 1902.259 kb on + strand, within IAI47_09010 at 1902.259 kb on + strand, within IAI47_09010 at 1902.260 kb on - strand, within IAI47_09010 at 1902.260 kb on - strand, within IAI47_09010 at 1902.260 kb on - strand, within IAI47_09010 at 1902.277 kb on + strand, within IAI47_09010 at 1902.277 kb on + strand, within IAI47_09010 at 1902.278 kb on - strand, within IAI47_09010 at 1902.278 kb on - strand, within IAI47_09010 at 1902.399 kb on - strand, within IAI47_09010 at 1902.431 kb on + strand, within IAI47_09010 at 1902.459 kb on + strand, within IAI47_09010 at 1902.504 kb on + strand, within IAI47_09010 at 1902.666 kb on - strand, within IAI47_09010 at 1902.689 kb on + strand at 1902.690 kb on - strand at 1902.690 kb on - strand at 1902.690 kb on - strand at 1902.690 kb on - strand at 1902.738 kb on + strand at 1902.796 kb on + strand at 1902.797 kb on - strand at 1902.797 kb on - strand at 1902.827 kb on + strand at 1902.900 kb on + strand, within IAI47_09015 at 1902.901 kb on - strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.911 kb on + strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.912 kb on - strand, within IAI47_09015 at 1902.914 kb on + strand, within IAI47_09015 at 1902.915 kb on - strand, within IAI47_09015 at 1903.032 kb on + strand, within IAI47_09015 at 1903.032 kb on + strand, within IAI47_09015 at 1903.033 kb on - strand, within IAI47_09015 at 1903.033 kb on - strand, within IAI47_09015 at 1903.033 kb on - strand, within IAI47_09015 at 1903.033 kb on - strand, within IAI47_09015 at 1903.042 kb on + strand, within IAI47_09015 at 1903.043 kb on - strand, within IAI47_09015 at 1903.113 kb on + strand, within IAI47_09015 at 1903.114 kb on - strand, within IAI47_09015 at 1903.114 kb on - strand, within IAI47_09015 at 1903.139 kb on + strand, within IAI47_09015 at 1903.139 kb on + strand, within IAI47_09015 at 1903.149 kb on + strand, within IAI47_09015 at 1903.160 kb on + strand, within IAI47_09015 at 1903.160 kb on + strand, within IAI47_09015 at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.237 kb on + strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.238 kb on - strand at 1903.242 kb on + strand at 1903.242 kb on + strand at 1903.242 kb on + strand at 1903.242 kb on + strand at 1903.243 kb on - strand at 1903.243 kb on - strand at 1903.244 kb on + strand at 1903.244 kb on + strand at 1903.244 kb on + strand at 1903.244 kb on + strand at 1903.245 kb on - strand at 1903.245 kb on - strand at 1903.257 kb on + strand at 1903.258 kb on - strand at 1903.284 kb on + strand at 1903.284 kb on + strand at 1903.285 kb on - strand at 1903.285 kb on - strand at 1903.285 kb on - strand at 1903.285 kb on - strand at 1903.299 kb on - strand at 1903.322 kb on + strand at 1903.322 kb on + strand at 1903.323 kb on - strand at 1903.323 kb on - strand at 1903.323 kb on - strand at 1903.327 kb on + strand at 1903.327 kb on + strand at 1903.328 kb on - strand at 1903.350 kb on + strand at 1903.350 kb on + strand at 1903.351 kb on - strand at 1903.351 kb on - strand at 1903.351 kb on - strand at 1903.354 kb on + strand at 1903.354 kb on + strand at 1903.355 kb on - strand at 1903.355 kb on - strand at 1903.373 kb on + strand at 1903.525 kb on + strand, within IAI47_09020 at 1903.525 kb on + strand, within IAI47_09020 at 1903.526 kb on - strand, within IAI47_09020 at 1903.533 kb on + strand, within IAI47_09020 at 1903.587 kb on + strand, within IAI47_09020 at 1903.588 kb on - strand, within IAI47_09020 at 1903.628 kb on + strand, within IAI47_09020 at 1903.629 kb on - strand, within IAI47_09020 at 1903.629 kb on - strand, within IAI47_09020 at 1903.695 kb on + strand, within IAI47_09020 at 1903.695 kb on + strand, within IAI47_09020 at 1903.695 kb on + strand, within IAI47_09020 at 1903.763 kb on + strand, within IAI47_09020 at 1903.763 kb on + strand, within IAI47_09020 at 1903.763 kb on + strand, within IAI47_09020 at 1903.764 kb on - strand, within IAI47_09020
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 uM, anaerobic remove 1,900,990 - IAI47_08990 0.77 +0.2 1,900,990 - IAI47_08990 0.77 -0.1 1,901,010 + IAI47_08990 0.79 -0.2 1,901,010 + IAI47_08990 0.79 +0.3 1,901,010 + IAI47_08990 0.79 +0.1 1,901,010 + IAI47_08990 0.79 -0.2 1,901,011 - IAI47_08990 0.79 +0.1 1,901,011 - IAI47_08990 0.79 +0.3 1,901,159 - +2.1 1,901,203 + +0.6 1,901,226 + +0.2 1,901,227 - +0.8 1,901,321 - +0.2 1,901,390 + +0.3 1,901,417 + +0.2 1,901,658 + -0.3 1,901,659 - -1.0 1,901,659 - +0.5 1,901,659 - +1.3 1,901,659 - +0.1 1,901,659 - +0.9 1,901,659 - -0.2 1,901,659 - -0.5 1,901,659 - +0.3 1,901,659 - +1.0 1,901,660 + +1.2 1,901,660 + +1.2 1,901,660 + -0.9 1,901,660 + +0.1 1,901,661 - -0.7 1,901,661 - -1.9 1,901,661 - +0.0 1,901,661 - -0.3 1,901,661 - +0.3 1,901,661 - +0.2 1,901,661 - +0.1 1,901,661 - -0.0 1,901,661 - -2.5 1,901,661 - +0.2 1,901,661 - +0.3 1,901,661 - -0.9 1,901,674 - +1.6 1,901,674 - -0.2 1,901,674 - -0.8 1,901,800 - +1.3 1,901,816 + +1.5 1,901,816 + +0.3 1,901,816 + -0.2 1,901,817 - -0.5 1,901,817 - +0.5 1,901,817 - -0.4 1,901,836 + -1.0 1,901,837 - +1.4 1,901,837 - -0.1 1,901,924 - +0.1 1,901,924 - +0.5 1,901,947 + -1.8 1,902,043 + IAI47_09010 0.14 -0.5 1,902,043 + IAI47_09010 0.14 +0.4 1,902,043 + IAI47_09010 0.14 -1.5 1,902,044 - IAI47_09010 0.14 -2.0 1,902,044 - IAI47_09010 0.14 +0.3 1,902,109 + IAI47_09010 0.22 -1.3 1,902,110 - IAI47_09010 0.22 -0.4 1,902,110 - IAI47_09010 0.22 -1.7 1,902,148 + IAI47_09010 0.27 -1.0 1,902,148 + IAI47_09010 0.27 -0.8 1,902,149 - IAI47_09010 0.27 +0.2 1,902,149 - IAI47_09010 0.27 -2.3 1,902,149 - IAI47_09010 0.27 -2.2 1,902,149 - IAI47_09010 0.27 -0.9 1,902,203 + IAI47_09010 0.33 +0.5 1,902,203 + IAI47_09010 0.33 -0.9 1,902,204 - IAI47_09010 0.33 -0.8 1,902,204 - IAI47_09010 0.33 +0.9 1,902,257 + IAI47_09010 0.39 -0.5 1,902,258 - IAI47_09010 0.40 -2.2 1,902,258 - IAI47_09010 0.40 -2.0 1,902,258 - IAI47_09010 0.40 -1.5 1,902,258 - IAI47_09010 0.40 -0.4 1,902,259 + IAI47_09010 0.40 -2.7 1,902,259 + IAI47_09010 0.40 -1.4 1,902,259 + IAI47_09010 0.40 -0.7 1,902,259 + IAI47_09010 0.40 -0.8 1,902,260 - IAI47_09010 0.40 -0.2 1,902,260 - IAI47_09010 0.40 -0.6 1,902,260 - IAI47_09010 0.40 -0.6 1,902,277 + IAI47_09010 0.42 -1.1 1,902,277 + IAI47_09010 0.42 +0.0 1,902,278 - IAI47_09010 0.42 +0.7 1,902,278 - IAI47_09010 0.42 +0.7 1,902,399 - IAI47_09010 0.56 -2.0 1,902,431 + IAI47_09010 0.60 -0.9 1,902,459 + IAI47_09010 0.63 -1.7 1,902,504 + IAI47_09010 0.69 -2.3 1,902,666 - IAI47_09010 0.88 -0.7 1,902,689 + -0.3 1,902,690 - -1.1 1,902,690 - -0.5 1,902,690 - -1.4 1,902,690 - +0.4 1,902,738 + -0.9 1,902,796 + -0.7 1,902,797 - +1.3 1,902,797 - +0.0 1,902,827 + -1.7 1,902,900 + IAI47_09015 0.16 -2.5 1,902,901 - IAI47_09015 0.16 -0.4 1,902,911 + IAI47_09015 0.19 -1.0 1,902,911 + IAI47_09015 0.19 -0.8 1,902,911 + IAI47_09015 0.19 -0.1 1,902,911 + IAI47_09015 0.19 +1.2 1,902,911 + IAI47_09015 0.19 -0.2 1,902,911 + IAI47_09015 0.19 -0.7 1,902,911 + IAI47_09015 0.19 +0.1 1,902,911 + IAI47_09015 0.19 -0.1 1,902,911 + IAI47_09015 0.19 -0.8 1,902,912 - IAI47_09015 0.19 -1.3 1,902,912 - IAI47_09015 0.19 +0.8 1,902,912 - IAI47_09015 0.19 -0.2 1,902,912 - IAI47_09015 0.19 +0.5 1,902,912 - IAI47_09015 0.19 +0.1 1,902,912 - IAI47_09015 0.19 -0.0 1,902,912 - IAI47_09015 0.19 -2.4 1,902,912 - IAI47_09015 0.19 +0.8 1,902,912 - IAI47_09015 0.19 +0.2 1,902,912 - IAI47_09015 0.19 +0.8 1,902,912 - IAI47_09015 0.19 -0.2 1,902,914 + IAI47_09015 0.19 -0.6 1,902,915 - IAI47_09015 0.20 -0.1 1,903,032 + IAI47_09015 0.45 -1.0 1,903,032 + IAI47_09015 0.45 +0.5 1,903,033 - IAI47_09015 0.45 +0.2 1,903,033 - IAI47_09015 0.45 +0.3 1,903,033 - IAI47_09015 0.45 +0.8 1,903,033 - IAI47_09015 0.45 -0.3 1,903,042 + IAI47_09015 0.47 +0.3 1,903,043 - IAI47_09015 0.48 -1.1 1,903,113 + IAI47_09015 0.63 -0.0 1,903,114 - IAI47_09015 0.63 -1.6 1,903,114 - IAI47_09015 0.63 -0.5 1,903,139 + IAI47_09015 0.69 -0.1 1,903,139 + IAI47_09015 0.69 +1.2 1,903,149 + IAI47_09015 0.71 -0.2 1,903,160 + IAI47_09015 0.73 +0.9 1,903,160 + IAI47_09015 0.73 -0.5 1,903,237 + +0.1 1,903,237 + -0.3 1,903,237 + -1.9 1,903,237 + +0.3 1,903,237 + -0.4 1,903,237 + -1.6 1,903,237 + +0.4 1,903,237 + -0.3 1,903,237 + -0.2 1,903,237 + +0.3 1,903,237 + -0.4 1,903,237 + +2.0 1,903,237 + +0.1 1,903,237 + -0.0 1,903,237 + +1.7 1,903,238 - -2.3 1,903,238 - +1.0 1,903,238 - +0.5 1,903,238 - +1.1 1,903,238 - +1.5 1,903,238 - +0.2 1,903,238 - -0.9 1,903,238 - -0.0 1,903,238 - +0.1 1,903,238 - -0.3 1,903,238 - +0.4 1,903,238 - -1.0 1,903,238 - +0.7 1,903,242 + -1.1 1,903,242 + +0.2 1,903,242 + +0.1 1,903,242 + -0.2 1,903,243 - +0.1 1,903,243 - +0.1 1,903,244 + +0.8 1,903,244 + -0.0 1,903,244 + +0.0 1,903,244 + +0.5 1,903,245 - -2.8 1,903,245 - -0.5 1,903,257 + +0.8 1,903,258 - +0.8 1,903,284 + -0.4 1,903,284 + -0.1 1,903,285 - +0.7 1,903,285 - -0.5 1,903,285 - +0.9 1,903,285 - +0.0 1,903,299 - -0.0 1,903,322 + +0.4 1,903,322 + +0.7 1,903,323 - -0.4 1,903,323 - +0.4 1,903,323 - +1.1 1,903,327 + -0.5 1,903,327 + -1.6 1,903,328 - +1.3 1,903,350 + +0.3 1,903,350 + -0.2 1,903,351 - +0.5 1,903,351 - -0.6 1,903,351 - +0.1 1,903,354 + +0.2 1,903,354 + -0.2 1,903,355 - +0.6 1,903,355 - -0.5 1,903,373 + +0.3 1,903,525 + IAI47_09020 0.16 +0.3 1,903,525 + IAI47_09020 0.16 +0.8 1,903,526 - IAI47_09020 0.16 -1.0 1,903,533 + IAI47_09020 0.17 -1.2 1,903,587 + IAI47_09020 0.23 +0.0 1,903,588 - IAI47_09020 0.23 -0.3 1,903,628 + IAI47_09020 0.28 +1.6 1,903,629 - IAI47_09020 0.28 -0.5 1,903,629 - IAI47_09020 0.28 -0.2 1,903,695 + IAI47_09020 0.35 -0.7 1,903,695 + IAI47_09020 0.35 +0.3 1,903,695 + IAI47_09020 0.35 -0.2 1,903,763 + IAI47_09020 0.42 +0.6 1,903,763 + IAI47_09020 0.42 +0.0 1,903,763 + IAI47_09020 0.42 +0.3 1,903,764 - IAI47_09020 0.43 +0.7
Or see this region's nucleotide sequence