Strain Fitness in Pantoea sp. MT58 around IAI47_07090

Experiment: copper (II) chloride 1 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 1 uM, anaerobic
1,495,330	+		IAI47_07085	0.17	-0.8
1,495,330	+		IAI47_07085	0.17	-0.3
1,495,330	+		IAI47_07085	0.17	-3.0
1,495,330	+		IAI47_07085	0.17	+1.4
1,495,330	+		IAI47_07085	0.17	-1.1
1,495,330	+		IAI47_07085	0.17	-1.6
1,495,330	+		IAI47_07085	0.17	-2.0
1,495,330	+		IAI47_07085	0.17	-1.8
1,495,330	+		IAI47_07085	0.17	-0.3
1,495,330	+		IAI47_07085	0.17	-2.2
1,495,330	+		IAI47_07085	0.17	-1.2
1,495,330	+		IAI47_07085	0.17	-3.6
1,495,331	-		IAI47_07085	0.17	-0.4
1,495,331	-		IAI47_07085	0.17	-1.6
1,495,331	-		IAI47_07085	0.17	-2.1
1,495,331	-		IAI47_07085	0.17	-0.4
1,495,331	-		IAI47_07085	0.17	-0.8
1,495,331	-		IAI47_07085	0.17	-1.4
1,495,331	-		IAI47_07085	0.17	-0.2
1,495,331	-		IAI47_07085	0.17	-1.7
1,495,331	-		IAI47_07085	0.17	+1.0
1,495,331	-		IAI47_07085	0.17	-0.4
1,495,331	-		IAI47_07085	0.17	-2.2
1,495,331	-		IAI47_07085	0.17	-0.6
1,495,331	-		IAI47_07085	0.17	-1.7
1,495,331	-		IAI47_07085	0.17	-0.5
1,495,331	-		IAI47_07085	0.17	-1.1
1,495,331	-		IAI47_07085	0.17	-1.9
1,495,331	-		IAI47_07085	0.17	+0.4
1,495,331	-		IAI47_07085	0.17	-3.1
1,495,334	+		IAI47_07085	0.17	-1.8
1,495,334	+		IAI47_07085	0.17	-3.0
1,495,334	+		IAI47_07085	0.17	-1.6
1,495,335	-		IAI47_07085	0.18	-1.5
1,495,335	-		IAI47_07085	0.18	-1.1
1,495,335	-		IAI47_07085	0.18	-1.2
1,495,442	+		IAI47_07085	0.27	+0.6
1,495,442	+		IAI47_07085	0.27	-1.0
1,495,443	-		IAI47_07085	0.28	-1.7
1,495,443	-		IAI47_07085	0.28	-1.6
1,495,538	+		IAI47_07085	0.36	-2.2
1,495,539	-		IAI47_07085	0.36	-0.0
1,495,539	-		IAI47_07085	0.36	-2.8
1,495,539	-		IAI47_07085	0.36	-0.5
1,495,595	+		IAI47_07085	0.42	-0.4
1,495,595	+		IAI47_07085	0.42	-1.5
1,495,596	-		IAI47_07085	0.42	+0.2
1,495,596	-		IAI47_07085	0.42	-1.5
1,495,596	-		IAI47_07085	0.42	-0.6
1,495,596	-		IAI47_07085	0.42	-2.4
1,495,596	-		IAI47_07085	0.42	-0.1
1,495,666	+		IAI47_07085	0.48	-0.2
1,495,666	+		IAI47_07085	0.48	-0.7
1,495,666	+		IAI47_07085	0.48	-0.7
1,495,666	+		IAI47_07085	0.48	-1.8
1,495,666	+		IAI47_07085	0.48	-1.5
1,495,666	+		IAI47_07085	0.48	-1.3
1,495,667	-		IAI47_07085	0.48	-0.4
1,495,667	-		IAI47_07085	0.48	+1.6
1,495,667	-		IAI47_07085	0.48	-3.1
1,495,667	-		IAI47_07085	0.48	-2.1
1,495,667	-		IAI47_07085	0.48	-1.3
1,495,683	+		IAI47_07085	0.50	-0.4
1,495,684	-		IAI47_07085	0.50	-2.3
1,495,737	-		IAI47_07085	0.55	-2.4
1,495,774	+		IAI47_07085	0.58	-3.8
1,495,774	+		IAI47_07085	0.58	-1.5
1,495,850	+		IAI47_07085	0.65	-2.3
1,495,850	+		IAI47_07085	0.65	-1.4
1,495,855	+		IAI47_07085	0.66	+0.0
1,495,855	+		IAI47_07085	0.66	-0.4
1,495,855	+		IAI47_07085	0.66	-1.7
1,495,855	+		IAI47_07085	0.66	-2.3
1,495,856	-		IAI47_07085	0.66	-1.5
1,495,888	+		IAI47_07085	0.69	-0.6
1,495,888	+		IAI47_07085	0.69	-1.6
1,495,888	+		IAI47_07085	0.69	-2.1
1,495,888	+		IAI47_07085	0.69	-0.7
1,495,888	+		IAI47_07085	0.69	-1.3
1,495,888	+		IAI47_07085	0.69	-1.7
1,495,888	+		IAI47_07085	0.69	-1.9
1,495,889	-		IAI47_07085	0.69	+0.8
1,495,889	-		IAI47_07085	0.69	-0.4
1,495,889	-		IAI47_07085	0.69	-1.6
1,495,889	-		IAI47_07085	0.69	-0.3
1,495,897	+		IAI47_07085	0.70	-1.7
1,495,897	+		IAI47_07085	0.70	-0.8
1,495,898	-		IAI47_07085	0.70	-1.2
1,495,898	-		IAI47_07085	0.70	-1.4
1,496,017	+		IAI47_07085	0.81	-0.5
1,496,063	-		IAI47_07085	0.85	-0.4
1,496,123	+				-0.5
1,496,123	+				-2.0
1,496,165	+				-2.6
1,496,165	+				-1.5
1,496,165	+				-0.6
1,496,165	+				-2.0
1,496,165	+				-2.2
1,496,165	+				-2.3
1,496,165	+				-1.8
1,496,165	-				-0.8
1,496,166	-				-2.5
1,496,166	-				-0.8
1,496,166	-				-1.6
1,496,166	-				-2.1
1,496,166	-				-0.4
1,496,166	-				-1.9
1,496,166	-				-2.8
1,496,166	-				-1.4
1,496,167	+				+0.3
1,496,167	+				-1.5
1,496,167	+				-0.5
1,496,167	+				-0.8
1,496,167	+				-2.0
1,496,167	+				-0.1
1,496,167	+				-2.0
1,496,167	+				-1.7
1,496,167	+				-2.2
1,496,167	+				-0.8
1,496,167	+				-1.2
1,496,167	+				-0.6
1,496,167	+				+0.1
1,496,167	+				-2.6
1,496,167	+				-1.3
1,496,168	-				+0.0
1,496,168	-				-2.3
1,496,168	-				-2.6
1,496,168	-				-1.9
1,496,168	-				-2.3
1,496,168	-				-2.5
1,496,168	-				-3.5
1,496,168	-				-2.1
1,496,168	-				-1.6
1,496,168	-				-1.2
1,496,168	-				-1.1
1,496,168	-				-1.2
1,496,168	-				-1.4
1,496,184	+				-0.2
1,496,184	+				-0.4
1,496,185	-				-1.2
1,496,210	+				-1.6
1,496,210	+				-1.8
1,496,211	-				-1.2
1,496,234	+				-1.3
1,496,235	-				+0.2
1,496,401	+		IAI47_07090	0.14	+0.1
1,496,401	+		IAI47_07090	0.14	-0.8
1,496,401	+		IAI47_07090	0.14	-1.1
1,496,402	-		IAI47_07090	0.14	-1.4
1,496,403	+		IAI47_07090	0.14	-1.3
1,496,403	+		IAI47_07090	0.14	+0.4
1,496,403	+		IAI47_07090	0.14	-1.5
1,496,409	+		IAI47_07090	0.15	-1.8
1,496,409	+		IAI47_07090	0.15	-0.4
1,496,409	+		IAI47_07090	0.15	-1.3
1,496,409	+		IAI47_07090	0.15	-0.9
1,496,409	+		IAI47_07090	0.15	-2.4
1,496,409	+		IAI47_07090	0.15	-0.6
1,496,409	+		IAI47_07090	0.15	-0.7
1,496,410	-		IAI47_07090	0.15	-2.4
1,496,410	-		IAI47_07090	0.15	-2.5
1,496,410	-		IAI47_07090	0.15	-1.9
1,496,410	-		IAI47_07090	0.15	-3.4
1,496,410	-		IAI47_07090	0.15	-1.3
1,496,410	-		IAI47_07090	0.15	-1.0
1,496,410	-		IAI47_07090	0.15	-3.2
1,496,442	+		IAI47_07090	0.17	+1.9
1,496,442	+		IAI47_07090	0.17	-1.8
1,496,480	+		IAI47_07090	0.20	-1.6
1,496,699	-		IAI47_07090	0.37	-0.9
1,496,830	+		IAI47_07090	0.47	-0.7
1,496,991	-		IAI47_07090	0.59	-3.3
1,496,991	-		IAI47_07090	0.59	-2.2
1,496,991	-		IAI47_07090	0.59	-2.1
1,497,012	+		IAI47_07090	0.61	+1.2
1,497,012	+		IAI47_07090	0.61	-1.6
1,497,053	+		IAI47_07090	0.64	-0.4
1,497,054	-		IAI47_07090	0.64	-1.4
1,497,054	-		IAI47_07090	0.64	-0.6
1,497,133	+		IAI47_07090	0.70	-3.3
1,497,133	+		IAI47_07090	0.70	-2.1
1,497,133	+		IAI47_07090	0.70	-1.8
1,497,133	+		IAI47_07090	0.70	-0.7
1,497,133	+		IAI47_07090	0.70	-2.2
1,497,134	-		IAI47_07090	0.70	+0.8
1,497,135	+		IAI47_07090	0.70	+0.2
1,497,135	+		IAI47_07090	0.70	-2.6
1,497,135	+		IAI47_07090	0.70	-0.6
1,497,135	+		IAI47_07090	0.70	-0.6
1,497,136	-		IAI47_07090	0.70	-2.2
1,497,136	-		IAI47_07090	0.70	-0.5
1,497,136	-		IAI47_07090	0.70	-0.4
1,497,305	+		IAI47_07090	0.83	-1.6
1,497,305	+		IAI47_07090	0.83	-0.7
1,497,346	+		IAI47_07090	0.86	-0.7
1,497,347	-		IAI47_07090	0.86	-1.0
1,497,347	-		IAI47_07090	0.86	-2.4
1,497,347	-		IAI47_07090	0.86	-2.0
1,497,395	+				-1.6
1,497,459	-				-2.6
1,497,459	-				-1.9
1,497,459	-				-1.8
1,497,512	-				-0.5
1,497,528	+				-2.8
1,497,529	-				-0.3
1,497,529	-				-1.1
1,497,547	+				-0.4
1,497,547	+				-0.4
1,497,547	+				+0.4
1,497,547	+				-0.3
1,497,548	-				-1.7
1,497,548	-				-0.6
1,497,548	-				-2.0
1,497,700	+		IAI47_07095	0.19	-0.3
1,497,700	+		IAI47_07095	0.19	-0.3
1,497,700	+		IAI47_07095	0.19	-2.1
1,497,701	-		IAI47_07095	0.19	-0.9
1,497,701	-		IAI47_07095	0.19	-1.1
1,497,744	+		IAI47_07095	0.24	-1.8
1,497,744	+		IAI47_07095	0.24	-2.5
1,497,744	+		IAI47_07095	0.24	-0.6
1,497,744	+		IAI47_07095	0.24	-0.4
1,497,744	+		IAI47_07095	0.24	-0.6
1,497,744	+		IAI47_07095	0.24	-0.6
1,497,744	+		IAI47_07095	0.24	-1.7
1,497,744	+		IAI47_07095	0.24	-3.3
1,497,744	+		IAI47_07095	0.24	+0.1
1,497,744	+		IAI47_07095	0.24	-0.7
1,497,744	+		IAI47_07095	0.24	-2.8
1,497,744	-		IAI47_07095	0.24	-0.0
1,497,745	-		IAI47_07095	0.24	-0.4
1,497,763	+		IAI47_07095	0.26	+0.2
1,497,764	-		IAI47_07095	0.26	-1.1
1,497,764	-		IAI47_07095	0.26	+1.3
1,497,794	-		IAI47_07095	0.30	-2.3
1,497,861	+		IAI47_07095	0.37	-2.7
1,497,861	+		IAI47_07095	0.37	-1.1
1,497,862	-		IAI47_07095	0.37	-1.2
1,497,977	+		IAI47_07095	0.50	+0.0
1,497,977	+		IAI47_07095	0.50	-1.8
1,498,014	+		IAI47_07095	0.54	-1.6
1,498,014	+		IAI47_07095	0.54	-1.3
1,498,015	-		IAI47_07095	0.54	-3.1
1,498,015	-		IAI47_07095	0.54	-1.1
1,498,015	-		IAI47_07095	0.54	-2.4
1,498,035	+		IAI47_07095	0.56	-1.8
1,498,035	+		IAI47_07095	0.56	-0.3
1,498,035	+		IAI47_07095	0.56	+0.5
1,498,036	-		IAI47_07095	0.57	-2.5
1,498,036	-		IAI47_07095	0.57	-1.3
1,498,057	+		IAI47_07095	0.59	-1.2
1,498,057	+		IAI47_07095	0.59	-0.8
1,498,057	+		IAI47_07095	0.59	-0.3
1,498,057	+		IAI47_07095	0.59	-2.9
1,498,058	-		IAI47_07095	0.59	-1.3
1,498,058	-		IAI47_07095	0.59	-1.8
1,498,058	-		IAI47_07095	0.59	-0.6
1,498,058	-		IAI47_07095	0.59	-1.6
1,498,150	-		IAI47_07095	0.69	-2.7
1,498,220	+		IAI47_07095	0.77	-3.0
1,498,221	-		IAI47_07095	0.77	-0.8
1,498,376	+				-0.9
1,498,376	+				-0.6
1,498,377	-				+1.9
1,498,377	-				-0.4
1,498,396	+				-0.7
1,498,396	+				+0.4
1,498,396	+				-1.0
1,498,396	+				-3.1
1,498,396	+				-1.2
1,498,396	+				-0.9
1,498,396	+				-1.6
1,498,396	+				-0.6
1,498,396	+				-2.7
1,498,397	-				-0.7
1,498,397	-				-0.8
1,498,397	-				+0.9
1,498,397	-				-1.2
1,498,400	+				-1.5
1,498,400	+				-0.1
1,498,400	+				-0.0
1,498,400	+				-2.8
1,498,400	+				-3.3
1,498,401	-				-1.8
1,498,401	-				-1.5
1,498,401	-				-0.5
1,498,401	-				-1.5
1,498,401	-				-2.1
1,498,417	+				-1.7
1,498,417	+				-1.3
1,498,418	-				-1.2
1,498,418	-				-1.2
1,498,418	-				-0.5
1,498,418	-				-1.5
1,498,421	+				-2.2
1,498,421	+				-0.8
1,498,421	+				-0.5
1,498,421	+				-0.1
1,498,421	+				-2.7
1,498,421	+				-1.0
1,498,421	+				-1.7
1,498,421	+				-2.2
1,498,422	-				-1.1
1,498,422	-				-1.0
1,498,422	-				-1.9
1,498,462	-				-0.8
1,498,462	-				-0.9
1,498,462	-				+0.0