Strain Fitness in Pantoea sp. MT58 around IAI47_06940

Experiment: copper (II) chloride 1 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06930 and IAI47_06935 are separated by 9 nucleotidesIAI47_06935 and IAI47_06940 are separated by 12 nucleotidesIAI47_06940 and IAI47_06945 are separated by 278 nucleotides IAI47_06930: IAI47_06930 - polysaccharide export protein, at 1,458,362 to 1,459,501 _06930 IAI47_06935: IAI47_06935 - protein tyrosine phosphatase, at 1,459,511 to 1,459,945 _06935 IAI47_06940: IAI47_06940 - tyrosine-protein kinase Wzc, at 1,459,958 to 1,462,135 _06940 IAI47_06945: IAI47_06945 - EpsG family protein, at 1,462,414 to 1,463,550 _06945 Position (kb) 1459 1460 1461 1462 1463Strain fitness (log2 ratio) -1 0 1 2at 1459.499 kb on + strandat 1459.499 kb on + strandat 1459.499 kb on + strandat 1459.499 kb on + strandat 1459.499 kb on + strandat 1459.499 kb on + strandat 1459.932 kb on + strandat 1459.932 kb on + strandat 1459.935 kb on + strandat 1459.935 kb on + strandat 1461.386 kb on - strand, within IAI47_06940at 1462.106 kb on + strandat 1462.112 kb on + strandat 1462.112 kb on + strandat 1462.112 kb on + strandat 1462.112 kb on + strandat 1462.112 kb on + strandat 1462.144 kb on + strandat 1462.219 kb on + strandat 1462.219 kb on + strandat 1462.219 kb on + strandat 1462.251 kb on + strandat 1462.251 kb on + strandat 1462.251 kb on + strandat 1462.251 kb on + strandat 1462.251 kb on + strandat 1462.373 kb on + strandat 1462.373 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 uM, anaerobic
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1,459,499 + -0.8
1,459,499 + -0.4
1,459,499 + +0.9
1,459,499 + +2.1
1,459,499 + +0.3
1,459,499 + +0.5
1,459,932 + +0.1
1,459,932 + -0.3
1,459,935 + -0.2
1,459,935 + -0.5
1,461,386 - IAI47_06940 0.66 -1.2
1,462,106 + +0.2
1,462,112 + +0.7
1,462,112 + +0.7
1,462,112 + -0.2
1,462,112 + -0.1
1,462,112 + +0.5
1,462,144 + +0.2
1,462,219 + +0.2
1,462,219 + +0.8
1,462,219 + +0.4
1,462,251 + -0.9
1,462,251 + -0.7
1,462,251 + -0.7
1,462,251 + -0.5
1,462,251 + +0.4
1,462,373 + -0.6
1,462,373 + -0.3

Or see this region's nucleotide sequence