Experiment: copper (II) chloride 1 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04150 and IAI47_04155 overlap by 1 nucleotides IAI47_04155 and IAI47_04160 overlap by 4 nucleotides IAI47_04160 and IAI47_04165 are separated by 60 nucleotides
IAI47_04150: IAI47_04150 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 871,926 to 873,731
_04150
IAI47_04155: IAI47_04155 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 873,731 to 875,452
_04155
IAI47_04160: IAI47_04160 - phosphoadenylyl-sulfate reductase, at 875,449 to 876,183
_04160
IAI47_04165: IAI47_04165 - hypothetical protein, at 876,244 to 876,528
_04165
Position (kb) 873
874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 872.837 kb on - strand, within IAI47_04150 at 872.837 kb on - strand, within IAI47_04150 at 872.837 kb on - strand, within IAI47_04150 at 872.903 kb on + strand, within IAI47_04150 at 872.904 kb on - strand, within IAI47_04150 at 872.925 kb on + strand, within IAI47_04150 at 872.926 kb on - strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.972 kb on + strand, within IAI47_04150 at 872.973 kb on - strand, within IAI47_04150 at 872.992 kb on - strand, within IAI47_04150 at 872.992 kb on - strand, within IAI47_04150 at 873.003 kb on + strand, within IAI47_04150 at 873.017 kb on + strand, within IAI47_04150 at 873.017 kb on + strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.018 kb on - strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.093 kb on + strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.094 kb on - strand, within IAI47_04150 at 873.098 kb on + strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.099 kb on - strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.133 kb on + strand, within IAI47_04150 at 873.134 kb on - strand, within IAI47_04150 at 873.134 kb on - strand, within IAI47_04150 at 873.145 kb on + strand, within IAI47_04150 at 873.145 kb on + strand, within IAI47_04150 at 873.146 kb on - strand, within IAI47_04150 at 873.146 kb on - strand, within IAI47_04150 at 873.164 kb on + strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.165 kb on - strand, within IAI47_04150 at 873.341 kb on + strand, within IAI47_04150 at 873.341 kb on + strand, within IAI47_04150 at 873.342 kb on - strand, within IAI47_04150 at 873.342 kb on - strand, within IAI47_04150 at 873.374 kb on + strand, within IAI47_04150 at 873.374 kb on + strand, within IAI47_04150 at 873.375 kb on - strand, within IAI47_04150 at 873.385 kb on + strand, within IAI47_04150 at 873.385 kb on + strand, within IAI47_04150 at 873.395 kb on + strand, within IAI47_04150 at 873.424 kb on - strand, within IAI47_04150 at 873.424 kb on - strand, within IAI47_04150 at 873.444 kb on + strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.445 kb on - strand, within IAI47_04150 at 873.470 kb on + strand, within IAI47_04150 at 873.471 kb on - strand, within IAI47_04150 at 873.510 kb on + strand, within IAI47_04150 at 873.510 kb on + strand, within IAI47_04150 at 873.511 kb on - strand, within IAI47_04150 at 873.514 kb on + strand, within IAI47_04150 at 873.515 kb on - strand, within IAI47_04150 at 873.515 kb on - strand, within IAI47_04150 at 873.521 kb on + strand, within IAI47_04150 at 873.521 kb on + strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.522 kb on - strand, within IAI47_04150 at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.579 kb on + strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.580 kb on - strand at 873.602 kb on + strand at 873.603 kb on - strand at 873.603 kb on - strand at 873.603 kb on - strand at 873.686 kb on - strand at 873.686 kb on - strand at 873.726 kb on + strand at 873.726 kb on + strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.727 kb on - strand at 873.730 kb on - strand at 873.730 kb on - strand at 873.739 kb on + strand at 873.774 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.809 kb on + strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.810 kb on - strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.902 kb on + strand at 873.903 kb on - strand at 873.903 kb on - strand at 873.903 kb on - strand at 873.903 kb on - strand at 874.003 kb on + strand, within IAI47_04155 at 874.003 kb on + strand, within IAI47_04155 at 874.003 kb on + strand, within IAI47_04155 at 874.004 kb on - strand, within IAI47_04155 at 874.004 kb on - strand, within IAI47_04155 at 874.046 kb on - strand, within IAI47_04155 at 874.055 kb on + strand, within IAI47_04155 at 874.056 kb on - strand, within IAI47_04155 at 874.182 kb on + strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.183 kb on - strand, within IAI47_04155 at 874.201 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.241 kb on + strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.242 kb on - strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.292 kb on + strand, within IAI47_04155 at 874.293 kb on - strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.361 kb on + strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.362 kb on - strand, within IAI47_04155 at 874.517 kb on - strand, within IAI47_04155 at 874.529 kb on + strand, within IAI47_04155 at 874.530 kb on - strand, within IAI47_04155 at 874.556 kb on + strand, within IAI47_04155 at 874.628 kb on - strand, within IAI47_04155 at 874.628 kb on - strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.655 kb on + strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.656 kb on - strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155 at 874.687 kb on + strand, within IAI47_04155 at 874.739 kb on + strand, within IAI47_04155 at 874.740 kb on - strand, within IAI47_04155 at 874.765 kb on + strand, within IAI47_04155 at 874.765 kb on + strand, within IAI47_04155 at 874.765 kb on + strand, within IAI47_04155 at 874.766 kb on - strand, within IAI47_04155 at 874.766 kb on - strand, within IAI47_04155 at 874.766 kb on - strand, within IAI47_04155 at 875.003 kb on - strand, within IAI47_04155 at 875.103 kb on + strand, within IAI47_04155 at 875.103 kb on + strand, within IAI47_04155 at 875.103 kb on + strand, within IAI47_04155 at 875.104 kb on - strand, within IAI47_04155 at 875.104 kb on - strand, within IAI47_04155 at 875.104 kb on - strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.145 kb on + strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.146 kb on - strand, within IAI47_04155 at 875.151 kb on + strand, within IAI47_04155 at 875.151 kb on + strand, within IAI47_04155 at 875.158 kb on + strand, within IAI47_04155 at 875.231 kb on + strand, within IAI47_04155 at 875.232 kb on - strand, within IAI47_04155 at 875.269 kb on + strand, within IAI47_04155 at 875.269 kb on + strand, within IAI47_04155 at 875.270 kb on - strand, within IAI47_04155 at 875.278 kb on + strand, within IAI47_04155 at 875.278 kb on + strand, within IAI47_04155 at 875.279 kb on - strand, within IAI47_04155 at 875.282 kb on + strand at 875.282 kb on + strand at 875.282 kb on + strand at 875.283 kb on - strand at 875.283 kb on - strand at 875.590 kb on + strand, within IAI47_04160 at 875.590 kb on + strand, within IAI47_04160 at 875.591 kb on - strand, within IAI47_04160 at 875.591 kb on - strand, within IAI47_04160 at 875.591 kb on - strand, within IAI47_04160 at 875.591 kb on - strand, within IAI47_04160 at 875.707 kb on + strand, within IAI47_04160 at 875.707 kb on + strand, within IAI47_04160 at 875.707 kb on + strand, within IAI47_04160 at 875.707 kb on + strand, within IAI47_04160 at 875.707 kb on + strand, within IAI47_04160 at 875.708 kb on - strand, within IAI47_04160 at 875.708 kb on - strand, within IAI47_04160 at 875.708 kb on - strand, within IAI47_04160 at 875.715 kb on + strand, within IAI47_04160 at 875.715 kb on + strand, within IAI47_04160 at 875.716 kb on - strand, within IAI47_04160 at 875.716 kb on - strand, within IAI47_04160 at 875.716 kb on - strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.839 kb on + strand, within IAI47_04160 at 875.840 kb on + strand, within IAI47_04160 at 875.840 kb on - strand, within IAI47_04160 at 875.840 kb on - strand, within IAI47_04160 at 875.842 kb on - strand, within IAI47_04160 at 875.842 kb on - strand, within IAI47_04160 at 875.850 kb on + strand, within IAI47_04160 at 875.963 kb on + strand, within IAI47_04160 at 875.963 kb on + strand, within IAI47_04160 at 875.964 kb on - strand, within IAI47_04160 at 875.964 kb on - strand, within IAI47_04160 at 875.980 kb on - strand, within IAI47_04160 at 875.980 kb on - strand, within IAI47_04160 at 875.980 kb on - strand, within IAI47_04160 at 876.007 kb on - strand, within IAI47_04160 at 876.026 kb on - strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.045 kb on + strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.046 kb on - strand, within IAI47_04160 at 876.049 kb on + strand, within IAI47_04160 at 876.049 kb on + strand, within IAI47_04160 at 876.049 kb on + strand, within IAI47_04160 at 876.050 kb on - strand, within IAI47_04160 at 876.050 kb on - strand, within IAI47_04160 at 876.050 kb on - strand, within IAI47_04160 at 876.073 kb on + strand, within IAI47_04160 at 876.074 kb on - strand, within IAI47_04160 at 876.182 kb on - strand at 876.182 kb on - strand at 876.182 kb on - strand at 876.182 kb on - strand at 876.182 kb on - strand at 876.216 kb on - strand at 876.245 kb on + strand at 876.245 kb on + strand at 876.256 kb on + strand at 876.257 kb on - strand at 876.308 kb on + strand, within IAI47_04165 at 876.308 kb on + strand, within IAI47_04165 at 876.308 kb on + strand, within IAI47_04165 at 876.308 kb on + strand, within IAI47_04165 at 876.308 kb on + strand, within IAI47_04165 at 876.308 kb on + strand, within IAI47_04165 at 876.309 kb on - strand, within IAI47_04165 at 876.309 kb on - strand, within IAI47_04165 at 876.309 kb on - strand, within IAI47_04165 at 876.309 kb on - strand, within IAI47_04165 at 876.408 kb on + strand, within IAI47_04165 at 876.408 kb on + strand, within IAI47_04165 at 876.408 kb on + strand, within IAI47_04165 at 876.408 kb on + strand, within IAI47_04165 at 876.409 kb on - strand, within IAI47_04165 at 876.409 kb on - strand, within IAI47_04165 at 876.409 kb on - strand, within IAI47_04165 at 876.424 kb on - strand, within IAI47_04165 at 876.424 kb on - strand, within IAI47_04165 at 876.443 kb on + strand, within IAI47_04165
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 uM, anaerobic remove 872,837 - IAI47_04150 0.50 -1.7 872,837 - IAI47_04150 0.50 -3.3 872,837 - IAI47_04150 0.50 -0.7 872,903 + IAI47_04150 0.54 +0.0 872,904 - IAI47_04150 0.54 +0.3 872,925 + IAI47_04150 0.55 -0.2 872,926 - IAI47_04150 0.55 -0.6 872,972 + IAI47_04150 0.58 -1.1 872,972 + IAI47_04150 0.58 -0.6 872,972 + IAI47_04150 0.58 -0.9 872,972 + IAI47_04150 0.58 +0.0 872,972 + IAI47_04150 0.58 -1.5 872,973 - IAI47_04150 0.58 -1.1 872,992 - IAI47_04150 0.59 -0.7 872,992 - IAI47_04150 0.59 -0.1 873,003 + IAI47_04150 0.60 -1.3 873,017 + IAI47_04150 0.60 -0.9 873,017 + IAI47_04150 0.60 -0.4 873,018 - IAI47_04150 0.60 -1.8 873,018 - IAI47_04150 0.60 -0.6 873,018 - IAI47_04150 0.60 -1.9 873,093 + IAI47_04150 0.65 +0.1 873,093 + IAI47_04150 0.65 +0.5 873,093 + IAI47_04150 0.65 -1.3 873,094 - IAI47_04150 0.65 -0.4 873,094 - IAI47_04150 0.65 -0.1 873,094 - IAI47_04150 0.65 +1.0 873,094 - IAI47_04150 0.65 +0.1 873,094 - IAI47_04150 0.65 -0.5 873,098 + IAI47_04150 0.65 -1.1 873,099 - IAI47_04150 0.65 -1.1 873,099 - IAI47_04150 0.65 -0.7 873,099 - IAI47_04150 0.65 +0.3 873,099 - IAI47_04150 0.65 +0.3 873,133 + IAI47_04150 0.67 -0.6 873,133 + IAI47_04150 0.67 +0.2 873,133 + IAI47_04150 0.67 -2.3 873,134 - IAI47_04150 0.67 -2.1 873,134 - IAI47_04150 0.67 -1.7 873,145 + IAI47_04150 0.67 +0.1 873,145 + IAI47_04150 0.67 -1.5 873,146 - IAI47_04150 0.68 -0.9 873,146 - IAI47_04150 0.68 -1.9 873,164 + IAI47_04150 0.69 -3.1 873,165 - IAI47_04150 0.69 -0.7 873,165 - IAI47_04150 0.69 -1.5 873,165 - IAI47_04150 0.69 +0.7 873,341 + IAI47_04150 0.78 -0.4 873,341 + IAI47_04150 0.78 -0.4 873,342 - IAI47_04150 0.78 -1.0 873,342 - IAI47_04150 0.78 +0.7 873,374 + IAI47_04150 0.80 -1.4 873,374 + IAI47_04150 0.80 +0.5 873,375 - IAI47_04150 0.80 -1.0 873,385 + IAI47_04150 0.81 -0.6 873,385 + IAI47_04150 0.81 -1.8 873,395 + IAI47_04150 0.81 -0.4 873,424 - IAI47_04150 0.83 -0.7 873,424 - IAI47_04150 0.83 -0.7 873,444 + IAI47_04150 0.84 -0.5 873,445 - IAI47_04150 0.84 -2.4 873,445 - IAI47_04150 0.84 -1.5 873,445 - IAI47_04150 0.84 -0.5 873,470 + IAI47_04150 0.85 -0.3 873,471 - IAI47_04150 0.86 -0.3 873,510 + IAI47_04150 0.88 -0.6 873,510 + IAI47_04150 0.88 -1.3 873,511 - IAI47_04150 0.88 -1.4 873,514 + IAI47_04150 0.88 +0.2 873,515 - IAI47_04150 0.88 -0.5 873,515 - IAI47_04150 0.88 -1.4 873,521 + IAI47_04150 0.88 -1.1 873,521 + IAI47_04150 0.88 -0.2 873,522 - IAI47_04150 0.88 -2.7 873,522 - IAI47_04150 0.88 -0.6 873,522 - IAI47_04150 0.88 +1.2 873,522 - IAI47_04150 0.88 +0.6 873,579 + -1.7 873,579 + -0.2 873,579 + -0.2 873,579 + +0.4 873,579 + -1.9 873,579 + -1.0 873,580 - -1.7 873,580 - -1.0 873,580 - +0.3 873,580 - -1.9 873,580 - -1.7 873,580 - +0.8 873,580 - -1.0 873,580 - -1.3 873,580 - +0.0 873,580 - -3.0 873,580 - +0.8 873,580 - -0.4 873,580 - -0.4 873,580 - +3.6 873,580 - -0.6 873,580 - -0.5 873,602 + -0.0 873,603 - -1.4 873,603 - +0.2 873,603 - -1.9 873,686 - -0.4 873,686 - +1.0 873,726 + -0.3 873,726 + -2.2 873,727 - +0.6 873,727 - -0.9 873,727 - -1.3 873,727 - -0.9 873,730 - -1.9 873,730 - +1.1 873,739 + -0.8 873,774 + -0.6 873,809 + -0.9 873,809 + -1.7 873,809 + -2.3 873,809 + -0.2 873,809 + -1.6 873,810 - +0.7 873,810 - -1.1 873,810 - -0.9 873,810 - +0.0 873,902 + -1.4 873,902 + +0.3 873,902 + -0.1 873,902 + -1.7 873,902 + +0.1 873,902 + -0.3 873,902 + -0.3 873,903 - -1.8 873,903 - -1.0 873,903 - -1.3 873,903 - +0.3 874,003 + IAI47_04155 0.16 +0.7 874,003 + IAI47_04155 0.16 -0.9 874,003 + IAI47_04155 0.16 -1.7 874,004 - IAI47_04155 0.16 +0.2 874,004 - IAI47_04155 0.16 -1.8 874,046 - IAI47_04155 0.18 -0.8 874,055 + IAI47_04155 0.19 -2.5 874,056 - IAI47_04155 0.19 -1.7 874,182 + IAI47_04155 0.26 -0.4 874,183 - IAI47_04155 0.26 -0.7 874,183 - IAI47_04155 0.26 -2.1 874,183 - IAI47_04155 0.26 -2.7 874,201 + IAI47_04155 0.27 +0.1 874,241 + IAI47_04155 0.30 -0.8 874,241 + IAI47_04155 0.30 -1.3 874,241 + IAI47_04155 0.30 -1.0 874,242 - IAI47_04155 0.30 -1.3 874,242 - IAI47_04155 0.30 -1.6 874,242 - IAI47_04155 0.30 -1.1 874,292 + IAI47_04155 0.33 -0.8 874,292 + IAI47_04155 0.33 -1.9 874,292 + IAI47_04155 0.33 -0.5 874,293 - 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Or see this region's nucleotide sequence