Strain Fitness in Pantoea sp. MT58 around IAI47_03595

Experiment: copper (II) chloride 1 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_03585 and IAI47_03590 are separated by 21 nucleotidesIAI47_03590 and IAI47_03595 are separated by 12 nucleotidesIAI47_03595 and IAI47_03600 are separated by 14 nucleotides IAI47_03585: IAI47_03585 - XTP/dITP diphosphatase, at 748,408 to 749,001 _03585 IAI47_03590: IAI47_03590 - YggT family protein, at 749,023 to 749,577 _03590 IAI47_03595: IAI47_03595 - YggS family pyridoxal phosphate-dependent enzyme, at 749,590 to 750,297 _03595 IAI47_03600: IAI47_03600 - type IV pilus twitching motility protein PilT, at 750,312 to 751,319 _03600 Position (kb) 749 750 751Strain fitness (log2 ratio) -2 -1 0 1 2 3at 748.631 kb on + strand, within IAI47_03585at 748.631 kb on + strand, within IAI47_03585at 748.631 kb on + strand, within IAI47_03585at 748.632 kb on - strand, within IAI47_03585at 748.632 kb on - strand, within IAI47_03585at 748.632 kb on - strand, within IAI47_03585at 748.740 kb on - strand, within IAI47_03585at 748.751 kb on + strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.752 kb on - strand, within IAI47_03585at 748.864 kb on - strand, within IAI47_03585at 748.921 kb on - strand, within IAI47_03585at 748.942 kb on + strandat 748.942 kb on + strandat 748.943 kb on - strandat 749.002 kb on - strandat 749.002 kb on - strandat 749.024 kb on + strandat 749.025 kb on - strandat 749.025 kb on - strandat 749.033 kb on + strandat 749.033 kb on + strandat 749.033 kb on + strandat 749.078 kb on + strandat 749.078 kb on + strandat 749.078 kb on + strandat 749.078 kb on + strandat 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.079 kb on - strand, within IAI47_03590at 749.137 kb on - strand, within IAI47_03590at 749.183 kb on + strand, within IAI47_03590at 749.183 kb on + strand, within IAI47_03590at 749.183 kb on + strand, within IAI47_03590at 749.209 kb on - strand, within IAI47_03590at 749.230 kb on + strand, within IAI47_03590at 749.230 kb on + strand, within IAI47_03590at 749.230 kb on + strand, within IAI47_03590at 749.230 kb on + strand, within IAI47_03590at 749.230 kb on + strand, within IAI47_03590at 749.231 kb on - strand, within IAI47_03590at 749.231 kb on - strand, within IAI47_03590at 749.255 kb on + strand, within IAI47_03590at 749.256 kb on - strand, within IAI47_03590at 749.256 kb on - strand, within IAI47_03590at 749.268 kb on + strand, within IAI47_03590at 749.298 kb on + strand, within IAI47_03590at 749.299 kb on - strand, within IAI47_03590at 749.332 kb on + strand, within IAI47_03590at 749.332 kb on + strand, within IAI47_03590at 749.332 kb on + strand, within IAI47_03590at 749.333 kb on - strand, within IAI47_03590at 749.338 kb on + strand, within IAI47_03590at 749.339 kb on - strand, within IAI47_03590at 749.339 kb on - strand, within IAI47_03590at 749.391 kb on + strand, within IAI47_03590at 749.391 kb on + strand, within IAI47_03590at 749.391 kb on + strandat 749.392 kb on - strand, within IAI47_03590at 749.416 kb on + strand, within IAI47_03590at 749.417 kb on - strand, within IAI47_03590at 749.417 kb on - strand, within IAI47_03590at 749.480 kb on + strand, within IAI47_03590at 749.515 kb on + strand, within IAI47_03590at 749.515 kb on + strand, within IAI47_03590at 749.516 kb on - strand, within IAI47_03590at 749.516 kb on - strand, within IAI47_03590at 749.534 kb on + strandat 749.534 kb on + strandat 749.554 kb on + strandat 749.572 kb on + strandat 749.572 kb on + strandat 749.589 kb on - strandat 749.589 kb on - strandat 749.589 kb on - strandat 749.591 kb on + strandat 749.591 kb on + strandat 749.591 kb on + strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.592 kb on - strandat 749.612 kb on + strandat 749.613 kb on - strandat 749.643 kb on + strandat 749.644 kb on - strandat 749.656 kb on - strandat 749.709 kb on + strand, within IAI47_03595at 749.710 kb on - strand, within IAI47_03595at 749.710 kb on - strand, within IAI47_03595at 749.723 kb on + strand, within IAI47_03595at 749.723 kb on + strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.724 kb on - strand, within IAI47_03595at 749.786 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.913 kb on + strand, within IAI47_03595at 749.914 kb on - strand, within IAI47_03595at 749.914 kb on - strand, within IAI47_03595at 749.914 kb on - strand, within IAI47_03595at 749.918 kb on - strand, within IAI47_03595at 749.918 kb on - strand, within IAI47_03595at 749.927 kb on - strand, within IAI47_03595at 749.927 kb on - strand, within IAI47_03595at 749.982 kb on + strand, within IAI47_03595at 749.983 kb on - strand, within IAI47_03595at 750.126 kb on - strand, within IAI47_03595at 750.193 kb on - strand, within IAI47_03595at 750.210 kb on + strand, within IAI47_03595at 750.274 kb on + strandat 750.274 kb on + strandat 750.275 kb on - strandat 750.275 kb on - strandat 750.275 kb on - strandat 750.297 kb on + strandat 750.297 kb on + strandat 750.297 kb on + strandat 750.297 kb on + strandat 750.298 kb on - strandat 750.298 kb on - strandat 750.298 kb on - strandat 750.298 kb on - strandat 750.298 kb on - strandat 750.298 kb on - strandat 750.312 kb on - strandat 750.338 kb on + strandat 750.338 kb on + strandat 750.338 kb on + strandat 750.339 kb on - strandat 750.339 kb on - strandat 750.343 kb on + strandat 750.343 kb on + strandat 750.344 kb on - strandat 750.344 kb on - strandat 750.344 kb on - strandat 750.344 kb on - strandat 750.350 kb on + strandat 750.350 kb on + strandat 750.350 kb on + strandat 750.350 kb on + strandat 750.350 kb on + strandat 750.350 kb on + strandat 750.351 kb on - strandat 750.351 kb on - strandat 750.351 kb on - strandat 750.351 kb on - strandat 750.351 kb on - strandat 750.465 kb on - strand, within IAI47_03600at 750.572 kb on + strand, within IAI47_03600at 750.573 kb on - strand, within IAI47_03600at 750.581 kb on + strand, within IAI47_03600at 750.608 kb on + strand, within IAI47_03600at 750.608 kb on + strand, within IAI47_03600at 750.653 kb on + strand, within IAI47_03600at 750.653 kb on + strand, within IAI47_03600at 750.653 kb on + strand, within IAI47_03600at 750.653 kb on + strand, within IAI47_03600at 750.653 kb on + strand, within IAI47_03600at 750.654 kb on - strand, within IAI47_03600at 750.654 kb on - strand, within IAI47_03600at 750.654 kb on - strand, within IAI47_03600at 750.667 kb on + strand, within IAI47_03600at 750.725 kb on + strand, within IAI47_03600at 750.776 kb on + strand, within IAI47_03600at 750.777 kb on - strand, within IAI47_03600at 750.777 kb on - strand, within IAI47_03600at 750.782 kb on + strand, within IAI47_03600at 750.782 kb on + strand, within IAI47_03600at 750.783 kb on - strand, within IAI47_03600at 750.783 kb on - strand, within IAI47_03600at 750.881 kb on - strand, within IAI47_03600at 750.881 kb on - strand, within IAI47_03600at 750.958 kb on + strand, within IAI47_03600at 751.024 kb on + strand, within IAI47_03600at 751.025 kb on - strand, within IAI47_03600at 751.159 kb on + strand, within IAI47_03600at 751.159 kb on + strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.228 kb on + strandat 751.229 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 uM, anaerobic
remove
748,631 + IAI47_03585 0.38 -0.5
748,631 + IAI47_03585 0.38 -1.0
748,631 + IAI47_03585 0.38 -0.9
748,632 - IAI47_03585 0.38 -0.2
748,632 - IAI47_03585 0.38 +1.0
748,632 - IAI47_03585 0.38 +1.0
748,740 - IAI47_03585 0.56 -0.7
748,751 + IAI47_03585 0.58 +1.3
748,752 - IAI47_03585 0.58 +0.8
748,752 - IAI47_03585 0.58 -0.3
748,752 - IAI47_03585 0.58 -1.6
748,752 - IAI47_03585 0.58 -0.6
748,752 - IAI47_03585 0.58 -0.8
748,752 - IAI47_03585 0.58 -0.4
748,864 - IAI47_03585 0.77 +1.4
748,921 - IAI47_03585 0.86 +1.5
748,942 + +1.1
748,942 + +0.0
748,943 - -0.1
749,002 - +0.1
749,002 - -0.9
749,024 + +0.0
749,025 - -0.5
749,025 - -0.4
749,033 + -0.3
749,033 + +0.1
749,033 + -0.6
749,078 + -1.0
749,078 + -1.4
749,078 + +0.4
749,078 + +0.9
749,079 - IAI47_03590 0.10 +2.6
749,079 - IAI47_03590 0.10 +0.4
749,079 - IAI47_03590 0.10 +0.6
749,079 - IAI47_03590 0.10 -2.3
749,079 - IAI47_03590 0.10 -0.9
749,079 - IAI47_03590 0.10 -0.6
749,079 - IAI47_03590 0.10 -0.9
749,079 - IAI47_03590 0.10 +0.4
749,137 - IAI47_03590 0.21 +0.3
749,183 + IAI47_03590 0.29 +1.5
749,183 + IAI47_03590 0.29 -2.5
749,183 + IAI47_03590 0.29 +1.4
749,209 - IAI47_03590 0.34 -0.7
749,230 + IAI47_03590 0.37 +0.3
749,230 + IAI47_03590 0.37 -0.6
749,230 + IAI47_03590 0.37 -0.2
749,230 + IAI47_03590 0.37 +0.5
749,230 + IAI47_03590 0.37 +0.9
749,231 - IAI47_03590 0.37 +0.1
749,231 - IAI47_03590 0.37 -2.1
749,255 + IAI47_03590 0.42 +1.0
749,256 - IAI47_03590 0.42 -0.6
749,256 - IAI47_03590 0.42 -0.7
749,268 + IAI47_03590 0.44 -0.3
749,298 + IAI47_03590 0.50 -0.5
749,299 - IAI47_03590 0.50 +1.4
749,332 + IAI47_03590 0.56 +0.1
749,332 + IAI47_03590 0.56 +1.3
749,332 + IAI47_03590 0.56 -1.4
749,333 - IAI47_03590 0.56 +0.5
749,338 + IAI47_03590 0.57 -0.0
749,339 - IAI47_03590 0.57 -1.3
749,339 - IAI47_03590 0.57 +0.6
749,391 + IAI47_03590 0.66 +0.3
749,391 + IAI47_03590 0.66 +0.4
749,391 + +2.6
749,392 - IAI47_03590 0.66 +0.1
749,416 + IAI47_03590 0.71 +0.7
749,417 - IAI47_03590 0.71 +0.6
749,417 - IAI47_03590 0.71 +0.6
749,480 + IAI47_03590 0.82 -1.6
749,515 + IAI47_03590 0.89 +0.1
749,515 + IAI47_03590 0.89 +0.8
749,516 - IAI47_03590 0.89 +1.3
749,516 - IAI47_03590 0.89 +1.5
749,534 + -0.4
749,534 + +0.0
749,554 + +0.1
749,572 + -0.7
749,572 + -0.2
749,589 - +0.5
749,589 - +0.9
749,589 - +0.1
749,591 + -2.7
749,591 + -0.0
749,591 + +0.4
749,592 - -0.2
749,592 - +0.2
749,592 - +0.1
749,592 - +0.1
749,592 - +0.6
749,592 - +1.3
749,612 + +0.5
749,613 - -1.0
749,643 + -1.8
749,644 - -0.9
749,656 - -0.6
749,709 + IAI47_03595 0.17 +0.2
749,710 - IAI47_03595 0.17 -0.2
749,710 - IAI47_03595 0.17 -0.9
749,723 + IAI47_03595 0.19 -0.5
749,723 + IAI47_03595 0.19 +0.6
749,724 - IAI47_03595 0.19 -1.9
749,724 - IAI47_03595 0.19 -0.2
749,724 - IAI47_03595 0.19 -0.5
749,724 - IAI47_03595 0.19 -1.1
749,786 + IAI47_03595 0.28 +0.5
749,913 + IAI47_03595 0.46 +0.0
749,913 + IAI47_03595 0.46 -0.5
749,913 + IAI47_03595 0.46 +0.0
749,913 + IAI47_03595 0.46 -1.4
749,913 + IAI47_03595 0.46 -0.8
749,913 + IAI47_03595 0.46 +0.2
749,914 - IAI47_03595 0.46 -0.8
749,914 - IAI47_03595 0.46 -0.1
749,914 - IAI47_03595 0.46 -1.2
749,918 - IAI47_03595 0.46 -1.1
749,918 - IAI47_03595 0.46 -0.3
749,927 - IAI47_03595 0.48 -0.2
749,927 - IAI47_03595 0.48 -0.6
749,982 + IAI47_03595 0.55 +0.2
749,983 - IAI47_03595 0.56 -0.3
750,126 - IAI47_03595 0.76 -0.5
750,193 - IAI47_03595 0.85 +0.9
750,210 + IAI47_03595 0.88 -0.3
750,274 + -0.8
750,274 + -0.2
750,275 - -0.0
750,275 - +0.5
750,275 - -0.2
750,297 + +0.1
750,297 + +0.1
750,297 + -0.6
750,297 + -2.4
750,298 - -0.8
750,298 - -0.6
750,298 - +0.5
750,298 - +0.1
750,298 - -0.1
750,298 - -0.5
750,312 - +0.0
750,338 + -1.1
750,338 + -0.8
750,338 + +1.6
750,339 - +0.6
750,339 - +2.6
750,343 + -0.6
750,343 + +1.2
750,344 - +0.8
750,344 - -0.9
750,344 - -0.8
750,344 - -2.5
750,350 + -0.5
750,350 + +0.8
750,350 + -0.1
750,350 + -1.1
750,350 + -0.1
750,350 + -0.1
750,351 - -0.7
750,351 - +0.3
750,351 - -0.1
750,351 - -0.1
750,351 - +0.1
750,465 - IAI47_03600 0.15 +1.1
750,572 + IAI47_03600 0.26 +0.3
750,573 - IAI47_03600 0.26 +3.6
750,581 + IAI47_03600 0.27 +0.4
750,608 + IAI47_03600 0.29 +0.5
750,608 + IAI47_03600 0.29 -1.0
750,653 + IAI47_03600 0.34 +0.0
750,653 + IAI47_03600 0.34 +0.6
750,653 + IAI47_03600 0.34 -0.3
750,653 + IAI47_03600 0.34 -1.8
750,653 + IAI47_03600 0.34 -0.4
750,654 - IAI47_03600 0.34 +0.8
750,654 - IAI47_03600 0.34 +0.2
750,654 - IAI47_03600 0.34 -0.1
750,667 + IAI47_03600 0.35 -0.2
750,725 + IAI47_03600 0.41 +1.2
750,776 + IAI47_03600 0.46 +0.4
750,777 - IAI47_03600 0.46 -0.5
750,777 - IAI47_03600 0.46 +0.4
750,782 + IAI47_03600 0.47 +0.4
750,782 + IAI47_03600 0.47 -0.3
750,783 - IAI47_03600 0.47 +0.5
750,783 - IAI47_03600 0.47 -0.4
750,881 - IAI47_03600 0.56 -0.7
750,881 - IAI47_03600 0.56 +0.1
750,958 + IAI47_03600 0.64 -1.9
751,024 + IAI47_03600 0.71 -1.2
751,025 - IAI47_03600 0.71 -0.6
751,159 + IAI47_03600 0.84 -0.4
751,159 + IAI47_03600 0.84 -1.1
751,160 - IAI47_03600 0.84 -0.6
751,160 - IAI47_03600 0.84 -0.3
751,160 - IAI47_03600 0.84 -1.9
751,160 - IAI47_03600 0.84 -0.3
751,228 + +1.6
751,229 - -0.4

Or see this region's nucleotide sequence