Experiment: copper (II) chloride 1 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00455 and IAI47_00460 are separated by 138 nucleotides IAI47_00460 and IAI47_00465 are separated by 438 nucleotides
IAI47_00455: IAI47_00455 - nitrogen regulation protein NR(II), at 101,915 to 102,964
_00455
IAI47_00460: IAI47_00460 - glutamate--ammonia ligase, at 103,103 to 104,512
_00460
IAI47_00465: IAI47_00465 - ribosome-dependent GTPase TypA, at 104,951 to 106,774
_00465
Position (kb) 103
104
105 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 102.118 kb on + strand, within IAI47_00455 at 102.118 kb on + strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.125 kb on + strand, within IAI47_00455 at 102.125 kb on + strand, within IAI47_00455 at 102.235 kb on + strand, within IAI47_00455 at 102.242 kb on + strand, within IAI47_00455 at 102.242 kb on + strand, within IAI47_00455 at 102.242 kb on + strand, within IAI47_00455 at 102.294 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.347 kb on + strand, within IAI47_00455 at 102.347 kb on + strand, within IAI47_00455 at 102.347 kb on + strand, within IAI47_00455 at 102.407 kb on + strand, within IAI47_00455 at 102.451 kb on + strand, within IAI47_00455 at 102.451 kb on + strand, within IAI47_00455 at 102.465 kb on + strand, within IAI47_00455 at 102.466 kb on - strand, within IAI47_00455 at 102.466 kb on - strand, within IAI47_00455 at 102.466 kb on - strand, within IAI47_00455 at 102.501 kb on - strand, within IAI47_00455 at 102.541 kb on + strand, within IAI47_00455 at 102.541 kb on + strand, within IAI47_00455 at 102.541 kb on + strand, within IAI47_00455 at 102.599 kb on + strand, within IAI47_00455 at 102.599 kb on + strand, within IAI47_00455 at 102.599 kb on + strand, within IAI47_00455 at 102.628 kb on + strand, within IAI47_00455 at 102.629 kb on - strand, within IAI47_00455 at 102.656 kb on + strand, within IAI47_00455 at 102.656 kb on + strand, within IAI47_00455 at 102.657 kb on - strand, within IAI47_00455 at 102.657 kb on - strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.721 kb on + strand, within IAI47_00455 at 102.721 kb on + strand, within IAI47_00455 at 102.722 kb on - strand, within IAI47_00455 at 102.778 kb on + strand, within IAI47_00455 at 102.778 kb on + strand, within IAI47_00455 at 102.779 kb on - strand, within IAI47_00455 at 102.779 kb on - strand, within IAI47_00455 at 102.800 kb on + strand, within IAI47_00455 at 102.801 kb on - strand, within IAI47_00455 at 102.848 kb on + strand, within IAI47_00455 at 102.874 kb on - strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.908 kb on - strand at 102.908 kb on - strand at 102.917 kb on + strand at 102.917 kb on + strand at 102.917 kb on + strand at 102.918 kb on - strand at 102.964 kb on + strand at 102.964 kb on + strand at 102.965 kb on - strand at 102.971 kb on + strand at 102.971 kb on + strand at 102.972 kb on - strand at 102.997 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.031 kb on + strand at 103.032 kb on - strand at 103.069 kb on - strand at 103.104 kb on + strand at 103.104 kb on + strand at 103.510 kb on - strand, within IAI47_00460 at 103.651 kb on - strand, within IAI47_00460 at 103.697 kb on - strand, within IAI47_00460 at 103.745 kb on - strand, within IAI47_00460 at 103.798 kb on - strand, within IAI47_00460 at 104.020 kb on - strand, within IAI47_00460 at 104.261 kb on - strand, within IAI47_00460 at 104.417 kb on - strand at 104.417 kb on - strand at 104.432 kb on - strand at 104.432 kb on - strand at 104.513 kb on - strand at 104.513 kb on - strand at 104.513 kb on - strand at 104.543 kb on - strand at 104.543 kb on - strand at 104.546 kb on + strand at 104.546 kb on + strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.646 kb on + strand at 104.646 kb on + strand at 104.646 kb on + strand at 104.647 kb on - strand at 104.657 kb on + strand at 104.658 kb on - strand at 104.658 kb on - strand at 104.697 kb on + strand at 104.727 kb on + strand at 104.727 kb on + strand at 104.727 kb on + strand at 104.727 kb on + strand at 104.728 kb on - strand at 104.728 kb on - strand at 104.760 kb on + strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.773 kb on + strand at 104.773 kb on + strand at 104.774 kb on - strand at 104.774 kb on - strand at 104.804 kb on + strand at 104.804 kb on + strand at 104.805 kb on - strand at 104.815 kb on + strand at 104.815 kb on + strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.856 kb on - strand at 104.856 kb on - strand at 104.856 kb on - strand at 104.859 kb on + strand at 104.859 kb on + strand at 104.859 kb on + strand at 104.859 kb on + strand at 104.860 kb on - strand at 104.860 kb on - strand at 104.860 kb on - strand at 104.860 kb on - strand at 104.860 kb on - strand at 104.863 kb on - strand at 104.913 kb on + strand at 104.913 kb on + strand at 104.913 kb on + strand at 104.914 kb on - strand at 104.914 kb on - strand at 104.918 kb on + strand at 104.919 kb on - strand at 104.926 kb on + strand at 104.932 kb on + strand at 104.932 kb on + strand at 104.968 kb on + strand at 105.139 kb on + strand, within IAI47_00465 at 105.140 kb on - strand, within IAI47_00465 at 105.140 kb on - strand, within IAI47_00465 at 105.173 kb on - strand, within IAI47_00465 at 105.265 kb on + strand, within IAI47_00465 at 105.266 kb on - strand, within IAI47_00465 at 105.339 kb on + strand, within IAI47_00465 at 105.339 kb on + strand, within IAI47_00465 at 105.340 kb on - strand, within IAI47_00465 at 105.382 kb on - strand, within IAI47_00465 at 105.382 kb on - strand, within IAI47_00465 at 105.460 kb on + strand, within IAI47_00465 at 105.496 kb on + strand at 105.497 kb on - strand at 105.509 kb on + strand, within IAI47_00465
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 uM, anaerobic remove 102,118 + IAI47_00455 0.19 -0.6 102,118 + IAI47_00455 0.19 -0.7 102,119 - IAI47_00455 0.19 -1.9 102,119 - IAI47_00455 0.19 +0.1 102,119 - IAI47_00455 0.19 -3.0 102,119 - IAI47_00455 0.19 -2.4 102,119 - IAI47_00455 0.19 -2.1 102,125 + IAI47_00455 0.20 +0.0 102,125 + IAI47_00455 0.20 +0.1 102,235 + IAI47_00455 0.30 +1.0 102,242 + IAI47_00455 0.31 -1.1 102,242 + IAI47_00455 0.31 -0.1 102,242 + IAI47_00455 0.31 -0.0 102,294 + IAI47_00455 0.36 -0.8 102,343 + IAI47_00455 0.41 -0.1 102,343 + IAI47_00455 0.41 -0.0 102,343 + IAI47_00455 0.41 -0.1 102,343 + IAI47_00455 0.41 +0.1 102,343 + IAI47_00455 0.41 -0.7 102,347 + IAI47_00455 0.41 -1.4 102,347 + IAI47_00455 0.41 -1.0 102,347 + IAI47_00455 0.41 -1.3 102,407 + IAI47_00455 0.47 -0.6 102,451 + IAI47_00455 0.51 +0.6 102,451 + IAI47_00455 0.51 +0.1 102,465 + IAI47_00455 0.52 -2.4 102,466 - IAI47_00455 0.52 -1.2 102,466 - IAI47_00455 0.52 -1.3 102,466 - IAI47_00455 0.52 +0.3 102,501 - IAI47_00455 0.56 -2.6 102,541 + IAI47_00455 0.60 -0.6 102,541 + IAI47_00455 0.60 +0.4 102,541 + IAI47_00455 0.60 +0.3 102,599 + IAI47_00455 0.65 -0.9 102,599 + IAI47_00455 0.65 +2.4 102,599 + IAI47_00455 0.65 -0.9 102,628 + IAI47_00455 0.68 -0.2 102,629 - IAI47_00455 0.68 -1.3 102,656 + IAI47_00455 0.71 +0.2 102,656 + IAI47_00455 0.71 +0.2 102,657 - IAI47_00455 0.71 -2.2 102,657 - IAI47_00455 0.71 -0.8 102,691 + IAI47_00455 0.74 +0.4 102,691 + IAI47_00455 0.74 -0.4 102,691 + IAI47_00455 0.74 -0.1 102,691 + IAI47_00455 0.74 -0.7 102,691 + IAI47_00455 0.74 -0.9 102,691 + IAI47_00455 0.74 +1.1 102,691 + IAI47_00455 0.74 -0.8 102,691 + IAI47_00455 0.74 -0.5 102,691 + IAI47_00455 0.74 -1.2 102,692 - IAI47_00455 0.74 -1.8 102,692 - IAI47_00455 0.74 -1.1 102,692 - IAI47_00455 0.74 +0.2 102,692 - IAI47_00455 0.74 -4.1 102,692 - IAI47_00455 0.74 -0.7 102,692 - IAI47_00455 0.74 -0.2 102,721 + IAI47_00455 0.77 -0.4 102,721 + IAI47_00455 0.77 +0.6 102,722 - IAI47_00455 0.77 -0.8 102,778 + IAI47_00455 0.82 +0.3 102,778 + IAI47_00455 0.82 -0.5 102,779 - IAI47_00455 0.82 -2.0 102,779 - IAI47_00455 0.82 -2.2 102,800 + IAI47_00455 0.84 -0.3 102,801 - IAI47_00455 0.84 -1.8 102,848 + IAI47_00455 0.89 +0.3 102,874 - -0.5 102,907 + -1.6 102,907 + -2.0 102,907 + -1.1 102,907 + -0.2 102,907 + -0.6 102,908 - -2.0 102,908 - -2.0 102,917 + +1.0 102,917 + -1.1 102,917 + -2.0 102,918 - -0.9 102,964 + -0.3 102,964 + -2.2 102,965 - +0.7 102,971 + +0.8 102,971 + -1.2 102,972 - -0.4 102,997 + +0.7 103,003 + +0.6 103,003 + +0.9 103,003 + -0.3 103,003 + -2.1 103,003 + +0.7 103,003 + -0.2 103,003 + -0.5 103,031 + +0.2 103,032 - -0.5 103,069 - +0.7 103,104 + +0.4 103,104 + -1.7 103,510 - IAI47_00460 0.29 -1.1 103,651 - IAI47_00460 0.39 -0.2 103,697 - IAI47_00460 0.42 +0.8 103,745 - IAI47_00460 0.46 -0.8 103,798 - IAI47_00460 0.49 -0.9 104,020 - IAI47_00460 0.65 -0.2 104,261 - IAI47_00460 0.82 +0.5 104,417 - -1.4 104,417 - -0.5 104,432 - -0.9 104,432 - +0.2 104,513 - -0.5 104,513 - +1.2 104,513 - -1.5 104,543 - -1.8 104,543 - -0.3 104,546 + -1.3 104,546 + -1.5 104,547 - -0.4 104,547 - -1.9 104,547 - -0.3 104,547 - -0.1 104,547 - +0.2 104,547 - +0.6 104,547 - -1.4 104,547 - -2.3 104,547 - -0.1 104,547 - -0.3 104,547 - -0.3 104,547 - -1.7 104,646 + -1.9 104,646 + -0.4 104,646 + -0.5 104,647 - -0.6 104,657 + -2.8 104,658 - -1.6 104,658 - -0.8 104,697 + -1.7 104,727 + -0.4 104,727 + -0.4 104,727 + +0.9 104,727 + +0.5 104,728 - -1.1 104,728 - +0.1 104,760 + -0.2 104,761 - -0.8 104,761 - +0.4 104,761 - +0.1 104,761 - -3.3 104,761 - +0.6 104,773 + +0.1 104,773 + -1.6 104,774 - +0.1 104,774 - -0.7 104,804 + -0.0 104,804 + -1.9 104,805 - +0.1 104,815 + -0.1 104,815 + -0.1 104,816 - +0.1 104,816 - +0.1 104,816 - -0.0 104,816 - -0.1 104,816 - +0.2 104,816 - -1.3 104,816 - -0.4 104,855 + +0.1 104,855 + -0.7 104,855 + +0.3 104,855 + +0.1 104,855 + -0.3 104,855 + +0.4 104,855 + -0.3 104,855 + -1.9 104,856 - +0.2 104,856 - -1.0 104,856 - -0.3 104,859 + +1.6 104,859 + -0.4 104,859 + -1.2 104,859 + -1.2 104,860 - -0.3 104,860 - -1.8 104,860 - -0.1 104,860 - +0.8 104,860 - +0.1 104,863 - +0.4 104,913 + +1.2 104,913 + +0.7 104,913 + +0.1 104,914 - +0.2 104,914 - -0.6 104,918 + +0.7 104,919 - +1.2 104,926 + -0.3 104,932 + -0.1 104,932 + +0.9 104,968 + +0.8 105,139 + IAI47_00465 0.10 +0.5 105,140 - IAI47_00465 0.10 -0.4 105,140 - IAI47_00465 0.10 -0.4 105,173 - IAI47_00465 0.12 +0.8 105,265 + IAI47_00465 0.17 +1.8 105,266 - IAI47_00465 0.17 +1.8 105,339 + IAI47_00465 0.21 -0.2 105,339 + IAI47_00465 0.21 +2.8 105,340 - IAI47_00465 0.21 +2.2 105,382 - IAI47_00465 0.24 +0.2 105,382 - IAI47_00465 0.24 +0.5 105,460 + IAI47_00465 0.28 +1.8 105,496 + +1.2 105,497 - +2.8 105,509 + IAI47_00465 0.31 +2.8
Or see this region's nucleotide sequence