Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18000

Experiment: L-mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS17995 and HSERO_RS18000 are separated by 52 nucleotidesHSERO_RS18000 and HSERO_RS18005 overlap by 4 nucleotidesHSERO_RS18005 and HSERO_RS18010 are separated by 395 nucleotides HSERO_RS17995: HSERO_RS17995 - translation initiation factor IF-2, at 4,131,518 to 4,134,382 _RS17995 HSERO_RS18000: HSERO_RS18000 - transcription termination factor NusA, at 4,134,435 to 4,135,994 _RS18000 HSERO_RS18005: HSERO_RS18005 - ribosome maturation protein RimP, at 4,135,991 to 4,136,485 _RS18005 HSERO_RS18010: HSERO_RS18010 - pseudouridine synthase, at 4,136,881 to 4,138,908 _RS18010 Position (kb) 4134 4135 4136Strain fitness (log2 ratio) -1 0 1at 4134.420 kb on - strandat 4136.014 kb on - strandat 4136.468 kb on - strandat 4136.707 kb on + strandat 4136.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-mannose (C)
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4,134,420 - +0.8
4,136,014 - -1.1
4,136,468 - -0.1
4,136,707 + -1.1
4,136,715 - -0.3

Or see this region's nucleotide sequence