Experiment: L-mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03645 and HSERO_RS03650 are separated by 21 nucleotides HSERO_RS03650 and HSERO_RS03655 are separated by 43 nucleotides HSERO_RS03655 and HSERO_RS03660 are separated by 30 nucleotides
HSERO_RS03645: HSERO_RS03645 - D-mannose ABC transporter, permease component <small>(from data)</small>, at 796,117 to 797,136
_RS03645
HSERO_RS03650: HSERO_RS03650 - Mannose isomerase (EC 5.3.1.7) <small>(from data)</small>, at 797,158 to 798,348
_RS03650
HSERO_RS03655: HSERO_RS03655 - ABC transporter substrate-binding protein, at 798,392 to 799,237
_RS03655
HSERO_RS03660: HSERO_RS03660 - diguanylate cyclase, at 799,268 to 800,668
_RS03660
Position (kb) 797
798
799 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 796.322 kb on + strand, within HSERO_RS03645 at 796.328 kb on + strand, within HSERO_RS03645 at 796.450 kb on + strand, within HSERO_RS03645 at 796.489 kb on - strand, within HSERO_RS03645 at 796.494 kb on - strand, within HSERO_RS03645 at 796.668 kb on - strand, within HSERO_RS03645 at 796.682 kb on - strand, within HSERO_RS03645 at 796.899 kb on - strand, within HSERO_RS03645 at 796.928 kb on + strand, within HSERO_RS03645 at 796.951 kb on - strand, within HSERO_RS03645 at 796.974 kb on - strand, within HSERO_RS03645 at 797.059 kb on - strand at 797.318 kb on + strand, within HSERO_RS03650 at 797.592 kb on + strand, within HSERO_RS03650 at 797.756 kb on + strand at 797.796 kb on + strand, within HSERO_RS03650 at 797.818 kb on - strand, within HSERO_RS03650 at 797.956 kb on - strand, within HSERO_RS03650 at 798.106 kb on + strand, within HSERO_RS03650 at 798.262 kb on - strand at 798.332 kb on - strand at 798.359 kb on + strand at 798.367 kb on - strand at 798.416 kb on + strand at 798.513 kb on + strand, within HSERO_RS03655 at 798.708 kb on + strand, within HSERO_RS03655 at 798.846 kb on + strand, within HSERO_RS03655 at 798.995 kb on + strand, within HSERO_RS03655 at 799.136 kb on + strand, within HSERO_RS03655 at 799.255 kb on + strand at 799.263 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-mannose (C) remove 796,322 + HSERO_RS03645 0.20 -3.7 796,328 + HSERO_RS03645 0.21 -4.2 796,450 + HSERO_RS03645 0.33 -3.1 796,489 - HSERO_RS03645 0.36 -1.2 796,494 - HSERO_RS03645 0.37 -3.9 796,668 - HSERO_RS03645 0.54 -0.5 796,682 - HSERO_RS03645 0.55 -3.0 796,899 - HSERO_RS03645 0.77 -4.2 796,928 + HSERO_RS03645 0.80 -2.0 796,951 - HSERO_RS03645 0.82 -5.1 796,974 - HSERO_RS03645 0.84 -1.4 797,059 - +0.4 797,318 + HSERO_RS03650 0.13 -0.6 797,592 + HSERO_RS03650 0.36 -5.7 797,756 + -3.0 797,796 + HSERO_RS03650 0.54 -3.2 797,818 - HSERO_RS03650 0.55 -3.9 797,956 - HSERO_RS03650 0.67 -5.5 798,106 + HSERO_RS03650 0.80 -4.1 798,262 - -4.3 798,332 - -3.1 798,359 + -1.1 798,367 - -0.2 798,416 + +0.9 798,513 + HSERO_RS03655 0.14 +0.1 798,708 + HSERO_RS03655 0.37 +0.1 798,846 + HSERO_RS03655 0.54 +0.4 798,995 + HSERO_RS03655 0.71 +0.8 799,136 + HSERO_RS03655 0.88 +0.0 799,255 + -0.1 799,263 - +1.0
Or see this region's nucleotide sequence