Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3679 and Rru_A3680 are separated by 61 nucleotides Rru_A3680 and Rru_A3681 are separated by 326 nucleotides Rru_A3681 and Rru_A3682 are separated by 27 nucleotides
Rru_A3679: Rru_A3679 - Rod shape-determining protein RodA (NCBI), at 4,226,709 to 4,227,839
_A3679
Rru_A3680: Rru_A3680 - Integral membrane protein TerC (NCBI), at 4,227,901 to 4,228,893
_A3680
Rru_A3681: Rru_A3681 - YceI (NCBI), at 4,229,220 to 4,229,825
_A3681
Rru_A3682: Rru_A3682 - Cytochrome B561 (NCBI), at 4,229,853 to 4,230,419
_A3682
Position (kb) 4227
4228
4229 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4227.903 kb on - strand at 4227.980 kb on - strand at 4228.025 kb on + strand, within Rru_A3680 at 4228.026 kb on - strand, within Rru_A3680 at 4228.026 kb on - strand, within Rru_A3680 at 4228.026 kb on - strand, within Rru_A3680 at 4228.071 kb on - strand, within Rru_A3680 at 4228.079 kb on + strand, within Rru_A3680 at 4228.080 kb on - strand, within Rru_A3680 at 4228.080 kb on - strand, within Rru_A3680 at 4228.082 kb on - strand, within Rru_A3680 at 4228.082 kb on - strand, within Rru_A3680 at 4228.082 kb on - strand, within Rru_A3680 at 4228.116 kb on - strand, within Rru_A3680 at 4228.458 kb on + strand, within Rru_A3680 at 4228.460 kb on + strand, within Rru_A3680 at 4228.461 kb on - strand, within Rru_A3680 at 4228.461 kb on - strand, within Rru_A3680 at 4228.540 kb on - strand, within Rru_A3680 at 4228.646 kb on + strand, within Rru_A3680 at 4228.646 kb on + strand, within Rru_A3680 at 4228.646 kb on + strand, within Rru_A3680 at 4228.646 kb on + strand, within Rru_A3680 at 4228.647 kb on - strand, within Rru_A3680 at 4228.659 kb on - strand, within Rru_A3680 at 4228.685 kb on + strand, within Rru_A3680 at 4228.686 kb on - strand, within Rru_A3680 at 4228.726 kb on - strand, within Rru_A3680 at 4228.727 kb on + strand, within Rru_A3680 at 4228.728 kb on - strand, within Rru_A3680 at 4228.728 kb on - strand, within Rru_A3680 at 4228.873 kb on + strand at 4228.873 kb on + strand at 4228.874 kb on - strand at 4229.325 kb on + strand, within Rru_A3681 at 4229.325 kb on + strand, within Rru_A3681 at 4229.326 kb on - strand, within Rru_A3681 at 4229.326 kb on - strand, within Rru_A3681 at 4229.327 kb on + strand, within Rru_A3681 at 4229.327 kb on + strand, within Rru_A3681 at 4229.328 kb on - strand, within Rru_A3681 at 4229.328 kb on - strand, within Rru_A3681 at 4229.763 kb on + strand, within Rru_A3681 at 4229.764 kb on - strand, within Rru_A3681 at 4229.823 kb on + strand at 4229.823 kb on + strand at 4229.823 kb on + strand at 4229.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 4,227,903 - -3.6 4,227,980 - +1.2 4,228,025 + Rru_A3680 0.12 +0.2 4,228,026 - Rru_A3680 0.13 -0.3 4,228,026 - Rru_A3680 0.13 +1.0 4,228,026 - Rru_A3680 0.13 -0.7 4,228,071 - Rru_A3680 0.17 -0.2 4,228,079 + Rru_A3680 0.18 +1.8 4,228,080 - Rru_A3680 0.18 -0.5 4,228,080 - Rru_A3680 0.18 -0.9 4,228,082 - Rru_A3680 0.18 +0.4 4,228,082 - Rru_A3680 0.18 -2.6 4,228,082 - Rru_A3680 0.18 -0.9 4,228,116 - Rru_A3680 0.22 +0.1 4,228,458 + Rru_A3680 0.56 -1.1 4,228,460 + Rru_A3680 0.56 -0.9 4,228,461 - Rru_A3680 0.56 -0.2 4,228,461 - Rru_A3680 0.56 -2.1 4,228,540 - Rru_A3680 0.64 +1.3 4,228,646 + Rru_A3680 0.75 -0.2 4,228,646 + Rru_A3680 0.75 +0.6 4,228,646 + Rru_A3680 0.75 -0.9 4,228,646 + Rru_A3680 0.75 +1.5 4,228,647 - Rru_A3680 0.75 -0.1 4,228,659 - Rru_A3680 0.76 -0.0 4,228,685 + Rru_A3680 0.79 -0.8 4,228,686 - Rru_A3680 0.79 -1.5 4,228,726 - Rru_A3680 0.83 +0.1 4,228,727 + Rru_A3680 0.83 -0.3 4,228,728 - Rru_A3680 0.83 +0.1 4,228,728 - Rru_A3680 0.83 +0.3 4,228,873 + -0.5 4,228,873 + -1.8 4,228,874 - -2.0 4,229,325 + Rru_A3681 0.17 +0.2 4,229,325 + Rru_A3681 0.17 +1.7 4,229,326 - Rru_A3681 0.17 +2.9 4,229,326 - Rru_A3681 0.17 -1.1 4,229,327 + Rru_A3681 0.18 +1.0 4,229,327 + Rru_A3681 0.18 -1.8 4,229,328 - Rru_A3681 0.18 -0.2 4,229,328 - Rru_A3681 0.18 +1.2 4,229,763 + Rru_A3681 0.90 -4.2 4,229,764 - Rru_A3681 0.90 +0.2 4,229,823 + -0.6 4,229,823 + +0.2 4,229,823 + +0.4 4,229,839 + -0.8
Or see this region's nucleotide sequence