Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3510 and Rru_A3511 are separated by 378 nucleotides Rru_A3511 and Rru_A3512 are separated by 109 nucleotides Rru_A3512 and Rru_A3513 are separated by 26 nucleotides
Rru_A3510: Rru_A3510 - ABC transporter component (NCBI), at 4,038,600 to 4,039,424
_A3510
Rru_A3511: Rru_A3511 - Aconitate hydratase 1 (NCBI), at 4,039,803 to 4,042,478
_A3511
Rru_A3512: Rru_A3512 - Glutamine amidotransferase class-I (NCBI), at 4,042,588 to 4,043,313
_A3512
Rru_A3513: Rru_A3513 - chemotaxis sensory transducer (NCBI), at 4,043,340 to 4,045,097
_A3513
Position (kb)
4039
4040
4041
4042
4043 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4038.905 kb on + strand, within Rru_A3510 at 4038.906 kb on - strand, within Rru_A3510 at 4039.063 kb on + strand, within Rru_A3510 at 4039.063 kb on + strand, within Rru_A3510 at 4039.063 kb on + strand, within Rru_A3510 at 4039.136 kb on + strand, within Rru_A3510 at 4039.136 kb on + strand, within Rru_A3510 at 4039.136 kb on + strand, within Rru_A3510 at 4039.136 kb on + strand, within Rru_A3510 at 4039.137 kb on - strand, within Rru_A3510 at 4039.137 kb on - strand, within Rru_A3510 at 4039.137 kb on - strand, within Rru_A3510 at 4039.137 kb on - strand, within Rru_A3510 at 4039.529 kb on - strand at 4039.629 kb on + strand at 4042.553 kb on + strand at 4042.554 kb on - strand at 4042.678 kb on + strand, within Rru_A3512 at 4042.679 kb on - strand, within Rru_A3512 at 4042.756 kb on + strand, within Rru_A3512 at 4042.771 kb on + strand, within Rru_A3512 at 4042.772 kb on - strand, within Rru_A3512 at 4042.888 kb on + strand, within Rru_A3512 at 4042.889 kb on - strand, within Rru_A3512 at 4042.889 kb on - strand, within Rru_A3512 at 4043.004 kb on + strand, within Rru_A3512 at 4043.004 kb on + strand, within Rru_A3512 at 4043.326 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 4,038,905 + Rru_A3510 0.37 +0.5 4,038,906 - Rru_A3510 0.37 -0.4 4,039,063 + Rru_A3510 0.56 -1.1 4,039,063 + Rru_A3510 0.56 +0.1 4,039,063 + Rru_A3510 0.56 +0.7 4,039,136 + Rru_A3510 0.65 +2.1 4,039,136 + Rru_A3510 0.65 +0.8 4,039,136 + Rru_A3510 0.65 -0.4 4,039,136 + Rru_A3510 0.65 +0.4 4,039,137 - Rru_A3510 0.65 -2.6 4,039,137 - Rru_A3510 0.65 -0.3 4,039,137 - Rru_A3510 0.65 -2.4 4,039,137 - Rru_A3510 0.65 -0.7 4,039,529 - +1.3 4,039,629 + -0.6 4,042,553 + -0.3 4,042,554 - +0.2 4,042,678 + Rru_A3512 0.12 -0.5 4,042,679 - Rru_A3512 0.13 -0.3 4,042,756 + Rru_A3512 0.23 -1.2 4,042,771 + Rru_A3512 0.25 -1.9 4,042,772 - Rru_A3512 0.25 +0.0 4,042,888 + Rru_A3512 0.41 -1.4 4,042,889 - Rru_A3512 0.41 +0.6 4,042,889 - Rru_A3512 0.41 +1.0 4,043,004 + Rru_A3512 0.57 +0.4 4,043,004 + Rru_A3512 0.57 -3.0 4,043,326 - +0.4
Or see this region's nucleotide sequence