Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3502

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3501 and Rru_A3502 are separated by 264 nucleotidesRru_A3502 and Rru_A3503 are separated by 57 nucleotidesRru_A3503 and Rru_A3504 are separated by 8 nucleotides Rru_A3501: Rru_A3501 - lipoprotein, putative (NCBI), at 4,028,971 to 4,029,768 _A3501 Rru_A3502: Rru_A3502 - hypothetical protein (NCBI), at 4,030,033 to 4,030,488 _A3502 Rru_A3503: Rru_A3503 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 4,030,546 to 4,031,010 _A3503 Rru_A3504: Rru_A3504 - putative phenylacetate-CoA ligase (NCBI), at 4,031,019 to 4,032,260 _A3504 Position (kb) 4030 4031Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4029.102 kb on + strand, within Rru_A3501at 4029.103 kb on - strand, within Rru_A3501at 4029.202 kb on + strand, within Rru_A3501at 4029.203 kb on - strand, within Rru_A3501at 4029.203 kb on - strand, within Rru_A3501at 4029.272 kb on + strand, within Rru_A3501at 4029.272 kb on + strand, within Rru_A3501at 4029.273 kb on - strand, within Rru_A3501at 4029.273 kb on - strand, within Rru_A3501at 4029.374 kb on + strand, within Rru_A3501at 4029.374 kb on + strand, within Rru_A3501at 4029.374 kb on + strand, within Rru_A3501at 4029.374 kb on + strand, within Rru_A3501at 4029.374 kb on + strand, within Rru_A3501at 4029.374 kb on + strand, within Rru_A3501at 4029.375 kb on - strand, within Rru_A3501at 4029.375 kb on - strand, within Rru_A3501at 4029.410 kb on + strand, within Rru_A3501at 4029.736 kb on + strandat 4029.823 kb on + strandat 4029.823 kb on + strandat 4029.823 kb on + strandat 4029.824 kb on - strandat 4029.824 kb on - strandat 4029.825 kb on + strandat 4029.861 kb on + strandat 4029.916 kb on - strandat 4029.954 kb on + strandat 4029.954 kb on + strandat 4029.954 kb on + strandat 4029.954 kb on + strandat 4029.954 kb on + strandat 4029.954 kb on + strandat 4029.955 kb on - strandat 4029.955 kb on - strandat 4029.955 kb on - strandat 4029.955 kb on - strandat 4029.955 kb on - strandat 4030.228 kb on + strand, within Rru_A3502at 4030.228 kb on + strand, within Rru_A3502at 4030.705 kb on + strand, within Rru_A3503at 4030.706 kb on - strand, within Rru_A3503at 4030.706 kb on - strand, within Rru_A3503at 4030.715 kb on - strand, within Rru_A3503at 4030.715 kb on - strand, within Rru_A3503at 4030.756 kb on + strand, within Rru_A3503at 4030.757 kb on - strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.849 kb on + strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.850 kb on - strand, within Rru_A3503at 4030.867 kb on - strand, within Rru_A3503at 4030.891 kb on + strand, within Rru_A3503at 4031.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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4,029,102 + Rru_A3501 0.16 -0.4
4,029,103 - Rru_A3501 0.17 -0.8
4,029,202 + Rru_A3501 0.29 +0.1
4,029,203 - Rru_A3501 0.29 +0.2
4,029,203 - Rru_A3501 0.29 +0.5
4,029,272 + Rru_A3501 0.38 +0.0
4,029,272 + Rru_A3501 0.38 +0.8
4,029,273 - Rru_A3501 0.38 -1.5
4,029,273 - Rru_A3501 0.38 -0.7
4,029,374 + Rru_A3501 0.51 +0.1
4,029,374 + Rru_A3501 0.51 -0.1
4,029,374 + Rru_A3501 0.51 +0.2
4,029,374 + Rru_A3501 0.51 +0.3
4,029,374 + Rru_A3501 0.51 +0.9
4,029,374 + Rru_A3501 0.51 +0.5
4,029,375 - Rru_A3501 0.51 +2.0
4,029,375 - Rru_A3501 0.51 +0.7
4,029,410 + Rru_A3501 0.55 -1.1
4,029,736 + -0.1
4,029,823 + +0.3
4,029,823 + +0.6
4,029,823 + +0.5
4,029,824 - -0.9
4,029,824 - -0.7
4,029,825 + -0.1
4,029,861 + +0.2
4,029,916 - -0.8
4,029,954 + -0.5
4,029,954 + -0.3
4,029,954 + -0.9
4,029,954 + -0.3
4,029,954 + -1.5
4,029,954 + +0.1
4,029,955 - -0.9
4,029,955 - -0.7
4,029,955 - -1.8
4,029,955 - +1.0
4,029,955 - -1.3
4,030,228 + Rru_A3502 0.43 -1.0
4,030,228 + Rru_A3502 0.43 -1.2
4,030,705 + Rru_A3503 0.34 -0.1
4,030,706 - Rru_A3503 0.34 -0.6
4,030,706 - Rru_A3503 0.34 -0.0
4,030,715 - Rru_A3503 0.36 +0.8
4,030,715 - Rru_A3503 0.36 -0.0
4,030,756 + Rru_A3503 0.45 -2.1
4,030,757 - Rru_A3503 0.45 -1.8
4,030,849 + Rru_A3503 0.65 +0.5
4,030,849 + Rru_A3503 0.65 +0.2
4,030,849 + Rru_A3503 0.65 +2.0
4,030,849 + Rru_A3503 0.65 -0.7
4,030,849 + Rru_A3503 0.65 -2.9
4,030,849 + Rru_A3503 0.65 -1.0
4,030,849 + Rru_A3503 0.65 +0.3
4,030,849 + Rru_A3503 0.65 -0.1
4,030,849 + Rru_A3503 0.65 +0.2
4,030,849 + Rru_A3503 0.65 -0.5
4,030,849 + Rru_A3503 0.65 +1.0
4,030,850 - Rru_A3503 0.65 -0.2
4,030,850 - Rru_A3503 0.65 +0.5
4,030,850 - Rru_A3503 0.65 +0.3
4,030,850 - Rru_A3503 0.65 -1.1
4,030,850 - Rru_A3503 0.65 -3.2
4,030,850 - Rru_A3503 0.65 +1.0
4,030,850 - Rru_A3503 0.65 +1.4
4,030,850 - Rru_A3503 0.65 -0.1
4,030,867 - Rru_A3503 0.69 -0.6
4,030,891 + Rru_A3503 0.74 +0.1
4,031,026 + -0.7

Or see this region's nucleotide sequence