Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3489

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3487 and Rru_A3488 are separated by 144 nucleotidesRru_A3488 and Rru_A3489 are separated by 128 nucleotidesRru_A3489 and Rru_A3490 are separated by 51 nucleotides Rru_A3487: Rru_A3487 - Threonyl-tRNA synthetase, class IIa (NCBI), at 4,012,361 to 4,014,292 _A3487 Rru_A3488: Rru_A3488 - Initiation factor 3 (NCBI), at 4,014,437 to 4,014,958 _A3488 Rru_A3489: Rru_A3489 - hypothetical protein (NCBI), at 4,015,087 to 4,016,529 _A3489 Rru_A3490: Rru_A3490 - Metallophosphoesterase (NCBI), at 4,016,581 to 4,017,432 _A3490 Position (kb) 4015 4016 4017Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4015.157 kb on + strandat 4015.158 kb on - strandat 4015.180 kb on - strandat 4015.214 kb on + strandat 4015.268 kb on + strand, within Rru_A3489at 4015.268 kb on + strand, within Rru_A3489at 4015.268 kb on + strand, within Rru_A3489at 4015.269 kb on - strand, within Rru_A3489at 4015.728 kb on - strand, within Rru_A3489at 4015.728 kb on - strand, within Rru_A3489at 4015.736 kb on + strand, within Rru_A3489at 4015.736 kb on + strand, within Rru_A3489at 4015.736 kb on + strand, within Rru_A3489at 4015.737 kb on - strand, within Rru_A3489at 4015.766 kb on + strand, within Rru_A3489at 4015.766 kb on + strand, within Rru_A3489at 4015.766 kb on + strand, within Rru_A3489at 4015.766 kb on + strand, within Rru_A3489at 4015.782 kb on - strand, within Rru_A3489at 4016.144 kb on + strand, within Rru_A3489at 4016.169 kb on - strand, within Rru_A3489at 4016.172 kb on - strand, within Rru_A3489at 4016.188 kb on - strand, within Rru_A3489at 4016.327 kb on + strand, within Rru_A3489at 4016.328 kb on - strand, within Rru_A3489at 4016.524 kb on - strandat 4016.582 kb on + strandat 4016.583 kb on - strandat 4016.583 kb on - strandat 4016.583 kb on - strandat 4016.612 kb on + strandat 4016.612 kb on + strandat 4016.613 kb on - strandat 4016.689 kb on + strand, within Rru_A3490at 4016.689 kb on + strand, within Rru_A3490at 4016.805 kb on + strand, within Rru_A3490at 4016.805 kb on + strand, within Rru_A3490at 4016.830 kb on + strand, within Rru_A3490at 4016.831 kb on - strand, within Rru_A3490at 4016.831 kb on - strand, within Rru_A3490at 4017.255 kb on - strand, within Rru_A3490at 4017.255 kb on - strand, within Rru_A3490at 4017.472 kb on - strandat 4017.475 kb on + strandat 4017.476 kb on - strandat 4017.476 kb on - strandat 4017.515 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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4,015,157 + +0.2
4,015,158 - -0.2
4,015,180 - -0.5
4,015,214 + +0.7
4,015,268 + Rru_A3489 0.13 -1.6
4,015,268 + Rru_A3489 0.13 +0.5
4,015,268 + Rru_A3489 0.13 +0.2
4,015,269 - Rru_A3489 0.13 -1.6
4,015,728 - Rru_A3489 0.44 +0.8
4,015,728 - Rru_A3489 0.44 +0.9
4,015,736 + Rru_A3489 0.45 +2.7
4,015,736 + Rru_A3489 0.45 -0.1
4,015,736 + Rru_A3489 0.45 -1.9
4,015,737 - Rru_A3489 0.45 +0.3
4,015,766 + Rru_A3489 0.47 -0.0
4,015,766 + Rru_A3489 0.47 +0.4
4,015,766 + Rru_A3489 0.47 -1.1
4,015,766 + Rru_A3489 0.47 -1.3
4,015,782 - Rru_A3489 0.48 +0.4
4,016,144 + Rru_A3489 0.73 -0.0
4,016,169 - Rru_A3489 0.75 +0.1
4,016,172 - Rru_A3489 0.75 +0.6
4,016,188 - Rru_A3489 0.76 +0.0
4,016,327 + Rru_A3489 0.86 +0.1
4,016,328 - Rru_A3489 0.86 -1.1
4,016,524 - +1.0
4,016,582 + -0.6
4,016,583 - +0.0
4,016,583 - -0.6
4,016,583 - +0.1
4,016,612 + -0.2
4,016,612 + +0.8
4,016,613 - -0.2
4,016,689 + Rru_A3490 0.13 -0.6
4,016,689 + Rru_A3490 0.13 +1.0
4,016,805 + Rru_A3490 0.26 -0.8
4,016,805 + Rru_A3490 0.26 -3.2
4,016,830 + Rru_A3490 0.29 -0.5
4,016,831 - Rru_A3490 0.29 +0.3
4,016,831 - Rru_A3490 0.29 -0.5
4,017,255 - Rru_A3490 0.79 +0.4
4,017,255 - Rru_A3490 0.79 -1.7
4,017,472 - -2.2
4,017,475 + +1.9
4,017,476 - +0.5
4,017,476 - +1.3
4,017,515 + +1.1

Or see this region's nucleotide sequence