Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3276

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3275 and Rru_A3276 are separated by 66 nucleotidesRru_A3276 and Rru_A3277 are separated by 2 nucleotides Rru_A3275: Rru_A3275 - Hsp33 protein (NCBI), at 3,772,689 to 3,773,624 _A3275 Rru_A3276: Rru_A3276 - Ornithine carbamoyltransferase (NCBI), at 3,773,691 to 3,774,617 _A3276 Rru_A3277: Rru_A3277 - Acetylornithine and succinylornithine aminotransferase (NCBI), at 3,774,620 to 3,775,810 _A3277 Position (kb) 3773 3774 3775Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3772.749 kb on + strandat 3772.756 kb on + strandat 3772.756 kb on + strandat 3772.756 kb on + strandat 3772.757 kb on - strandat 3772.790 kb on + strand, within Rru_A3275at 3772.791 kb on - strand, within Rru_A3275at 3773.177 kb on - strand, within Rru_A3275at 3773.177 kb on - strand, within Rru_A3275at 3773.230 kb on + strand, within Rru_A3275at 3773.510 kb on - strand, within Rru_A3275at 3773.630 kb on + strandat 3773.693 kb on - strandat 3773.705 kb on + strandat 3773.705 kb on + strandat 3773.705 kb on + strandat 3773.705 kb on + strandat 3773.706 kb on - strandat 3773.991 kb on + strand, within Rru_A3276at 3773.991 kb on + strand, within Rru_A3276at 3773.992 kb on - strand, within Rru_A3276at 3774.316 kb on + strand, within Rru_A3276at 3774.316 kb on + strand, within Rru_A3276at 3774.316 kb on + strand, within Rru_A3276at 3774.316 kb on + strand, within Rru_A3276at 3774.316 kb on + strand, within Rru_A3276at 3774.668 kb on + strandat 3775.010 kb on + strand, within Rru_A3277at 3775.023 kb on + strand, within Rru_A3277at 3775.023 kb on + strand, within Rru_A3277at 3775.024 kb on - strand, within Rru_A3277at 3775.215 kb on + strand, within Rru_A3277at 3775.215 kb on + strand, within Rru_A3277at 3775.216 kb on - strand, within Rru_A3277at 3775.216 kb on - strand, within Rru_A3277at 3775.216 kb on - strand, within Rru_A3277

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,772,749 + +0.6
3,772,756 + +0.4
3,772,756 + +0.6
3,772,756 + +0.2
3,772,757 - -0.4
3,772,790 + Rru_A3275 0.11 +1.7
3,772,791 - Rru_A3275 0.11 +0.3
3,773,177 - Rru_A3275 0.52 +1.4
3,773,177 - Rru_A3275 0.52 +0.1
3,773,230 + Rru_A3275 0.58 -1.9
3,773,510 - Rru_A3275 0.88 -1.3
3,773,630 + +1.6
3,773,693 - +0.2
3,773,705 + -3.7
3,773,705 + -3.1
3,773,705 + -2.7
3,773,705 + -1.8
3,773,706 - -2.7
3,773,991 + Rru_A3276 0.32 -6.1
3,773,991 + Rru_A3276 0.32 -1.4
3,773,992 - Rru_A3276 0.32 -5.4
3,774,316 + Rru_A3276 0.67 -2.5
3,774,316 + Rru_A3276 0.67 -2.8
3,774,316 + Rru_A3276 0.67 -3.2
3,774,316 + Rru_A3276 0.67 -4.8
3,774,316 + Rru_A3276 0.67 -3.8
3,774,668 + -2.3
3,775,010 + Rru_A3277 0.33 -5.2
3,775,023 + Rru_A3277 0.34 +0.5
3,775,023 + Rru_A3277 0.34 -3.2
3,775,024 - Rru_A3277 0.34 -2.4
3,775,215 + Rru_A3277 0.50 -3.3
3,775,215 + Rru_A3277 0.50 -4.2
3,775,216 - Rru_A3277 0.50 -3.0
3,775,216 - Rru_A3277 0.50 -2.1
3,775,216 - Rru_A3277 0.50 +0.9

Or see this region's nucleotide sequence