Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3082

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3080 and Rru_A3081 are separated by 186 nucleotidesRru_A3081 and Rru_A3082 are separated by 0 nucleotidesRru_A3082 and Rru_A3083 are separated by 71 nucleotidesRru_A3083 and Rru_A3084 are separated by 90 nucleotides Rru_A3080: Rru_A3080 - hypothetical protein (NCBI), at 3,545,804 to 3,547,000 _A3080 Rru_A3081: Rru_A3081 - Protein of unknown function DUF891 (NCBI), at 3,547,187 to 3,547,483 _A3081 Rru_A3082: Rru_A3082 - Predicted transcriptional regulator (NCBI), at 3,547,484 to 3,547,765 _A3082 Rru_A3083: Rru_A3083 - NADPH-dependent FMN reductase (NCBI), at 3,547,837 to 3,548,391 _A3083 Rru_A3084: Rru_A3084 - Small GTP-binding protein domain (NCBI), at 3,548,482 to 3,549,984 _A3084 Position (kb) 3547 3548Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3546.486 kb on + strand, within Rru_A3080at 3546.555 kb on + strand, within Rru_A3080at 3546.556 kb on - strand, within Rru_A3080at 3546.556 kb on - strand, within Rru_A3080at 3546.764 kb on + strand, within Rru_A3080at 3546.764 kb on + strand, within Rru_A3080at 3546.764 kb on + strand, within Rru_A3080at 3546.911 kb on + strandat 3546.911 kb on + strandat 3546.911 kb on + strandat 3546.912 kb on - strandat 3546.942 kb on - strandat 3547.153 kb on + strandat 3547.154 kb on - strandat 3547.154 kb on - strandat 3547.154 kb on - strandat 3547.169 kb on + strandat 3547.370 kb on + strand, within Rru_A3081at 3547.371 kb on - strand, within Rru_A3081at 3547.371 kb on - strand, within Rru_A3081at 3547.377 kb on + strand, within Rru_A3081at 3547.377 kb on + strand, within Rru_A3081at 3547.377 kb on + strand, within Rru_A3081at 3547.378 kb on - strand, within Rru_A3081at 3547.378 kb on - strand, within Rru_A3081at 3547.442 kb on - strand, within Rru_A3081at 3547.583 kb on + strand, within Rru_A3082at 3547.583 kb on + strand, within Rru_A3082at 3547.583 kb on + strand, within Rru_A3082at 3547.583 kb on + strand, within Rru_A3082at 3547.584 kb on - strand, within Rru_A3082at 3547.586 kb on - strand, within Rru_A3082at 3547.671 kb on - strand, within Rru_A3082at 3547.672 kb on + strand, within Rru_A3082at 3547.672 kb on + strand, within Rru_A3082at 3547.672 kb on + strand, within Rru_A3082at 3547.763 kb on + strandat 3547.763 kb on + strandat 3547.764 kb on - strandat 3547.959 kb on + strand, within Rru_A3083at 3547.959 kb on + strand, within Rru_A3083at 3547.959 kb on + strand, within Rru_A3083at 3547.960 kb on - strand, within Rru_A3083at 3547.960 kb on - strand, within Rru_A3083at 3547.960 kb on - strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.961 kb on + strand, within Rru_A3083at 3547.962 kb on - strand, within Rru_A3083at 3547.962 kb on - strand, within Rru_A3083at 3547.962 kb on - strand, within Rru_A3083at 3547.962 kb on - strand, within Rru_A3083at 3547.962 kb on - strand, within Rru_A3083at 3548.252 kb on + strand, within Rru_A3083at 3548.253 kb on - strand, within Rru_A3083at 3548.382 kb on - strandat 3548.382 kb on - strandat 3548.382 kb on - strandat 3548.474 kb on - strandat 3548.484 kb on - strandat 3548.484 kb on - strandat 3548.484 kb on - strandat 3548.488 kb on - strandat 3548.488 kb on - strandat 3548.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,546,486 + Rru_A3080 0.57 -3.7
3,546,555 + Rru_A3080 0.63 -2.4
3,546,556 - Rru_A3080 0.63 -4.0
3,546,556 - Rru_A3080 0.63 -2.2
3,546,764 + Rru_A3080 0.80 +0.4
3,546,764 + Rru_A3080 0.80 +0.6
3,546,764 + Rru_A3080 0.80 +0.6
3,546,911 + +2.2
3,546,911 + +0.8
3,546,911 + +0.3
3,546,912 - +0.2
3,546,942 - -0.1
3,547,153 + +1.0
3,547,154 - -1.4
3,547,154 - -1.3
3,547,154 - +0.6
3,547,169 + +1.2
3,547,370 + Rru_A3081 0.62 -0.7
3,547,371 - Rru_A3081 0.62 -4.3
3,547,371 - Rru_A3081 0.62 -0.0
3,547,377 + Rru_A3081 0.64 -0.7
3,547,377 + Rru_A3081 0.64 -2.1
3,547,377 + Rru_A3081 0.64 -0.1
3,547,378 - Rru_A3081 0.64 -2.5
3,547,378 - Rru_A3081 0.64 +0.3
3,547,442 - Rru_A3081 0.86 +0.3
3,547,583 + Rru_A3082 0.35 +0.6
3,547,583 + Rru_A3082 0.35 -0.4
3,547,583 + Rru_A3082 0.35 +0.1
3,547,583 + Rru_A3082 0.35 +0.8
3,547,584 - Rru_A3082 0.35 -0.2
3,547,586 - Rru_A3082 0.36 +2.6
3,547,671 - Rru_A3082 0.66 -0.8
3,547,672 + Rru_A3082 0.67 +0.5
3,547,672 + Rru_A3082 0.67 -1.5
3,547,672 + Rru_A3082 0.67 -1.5
3,547,763 + -0.5
3,547,763 + -0.4
3,547,764 - +0.7
3,547,959 + Rru_A3083 0.22 -1.8
3,547,959 + Rru_A3083 0.22 -0.1
3,547,959 + Rru_A3083 0.22 +0.8
3,547,960 - Rru_A3083 0.22 +0.3
3,547,960 - Rru_A3083 0.22 -3.6
3,547,960 - Rru_A3083 0.22 -0.7
3,547,961 + Rru_A3083 0.22 -1.1
3,547,961 + Rru_A3083 0.22 +0.2
3,547,961 + Rru_A3083 0.22 -0.4
3,547,961 + Rru_A3083 0.22 -3.4
3,547,961 + Rru_A3083 0.22 -0.1
3,547,961 + Rru_A3083 0.22 -0.0
3,547,961 + Rru_A3083 0.22 -1.0
3,547,962 - Rru_A3083 0.23 +0.9
3,547,962 - Rru_A3083 0.23 -2.6
3,547,962 - Rru_A3083 0.23 +0.4
3,547,962 - Rru_A3083 0.23 +0.3
3,547,962 - Rru_A3083 0.23 -0.6
3,548,252 + Rru_A3083 0.75 +2.4
3,548,253 - Rru_A3083 0.75 -0.8
3,548,382 - +0.9
3,548,382 - -0.4
3,548,382 - +0.1
3,548,474 - +0.3
3,548,484 - -0.2
3,548,484 - -0.5
3,548,484 - +0.8
3,548,488 - -0.2
3,548,488 - -0.2
3,548,496 - -0.9

Or see this region's nucleotide sequence