Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2923 and Rru_A2924 are separated by 4 nucleotides Rru_A2924 and Rru_A2925 are separated by 173 nucleotides Rru_A2925 and Rru_A2926 overlap by 4 nucleotides
Rru_A2923: Rru_A2923 - hypothetical protein (NCBI), at 3,365,295 to 3,366,488
_A2923
Rru_A2924: Rru_A2924 - Glycosyl transferase, family 2 (NCBI), at 3,366,493 to 3,367,281
_A2924
Rru_A2925: Rru_A2925 - Major facilitator superfamily MFS_1 (NCBI), at 3,367,455 to 3,368,732
_A2925
Rru_A2926: Rru_A2926 - RND efflux system, outer membrane lipoprotein, NodT (NCBI), at 3,368,729 to 3,370,147
_A2926
Position (kb)
3367
3368
3369 Strain fitness (log2 ratio)
-2
-1
0
1 at 3366.486 kb on + strand at 3366.486 kb on + strand at 3366.486 kb on + strand at 3366.495 kb on - strand at 3366.660 kb on + strand, within Rru_A2924 at 3366.722 kb on + strand, within Rru_A2924 at 3366.722 kb on + strand, within Rru_A2924 at 3366.722 kb on + strand, within Rru_A2924 at 3366.723 kb on - strand, within Rru_A2924 at 3366.972 kb on - strand, within Rru_A2924 at 3366.972 kb on - strand, within Rru_A2924 at 3366.972 kb on - strand, within Rru_A2924 at 3366.972 kb on - strand, within Rru_A2924 at 3367.284 kb on + strand at 3367.285 kb on - strand at 3367.340 kb on + strand at 3367.340 kb on + strand at 3367.341 kb on - strand at 3367.380 kb on + strand at 3367.380 kb on + strand at 3367.498 kb on - strand at 3367.711 kb on + strand, within Rru_A2925 at 3368.359 kb on + strand, within Rru_A2925 at 3368.359 kb on + strand, within Rru_A2925 at 3368.359 kb on + strand, within Rru_A2925 at 3368.360 kb on - strand, within Rru_A2925 at 3368.360 kb on - strand, within Rru_A2925 at 3368.360 kb on - strand, within Rru_A2925 at 3368.360 kb on - strand, within Rru_A2925 at 3368.793 kb on + strand at 3368.793 kb on + strand at 3368.794 kb on - strand at 3368.794 kb on - strand at 3368.834 kb on + strand at 3368.835 kb on - strand at 3368.835 kb on - strand at 3369.508 kb on + strand, within Rru_A2926 at 3369.508 kb on + strand, within Rru_A2926 at 3369.509 kb on - strand, within Rru_A2926 at 3369.509 kb on - strand, within Rru_A2926 at 3369.509 kb on - strand, within Rru_A2926 at 3369.630 kb on + strand, within Rru_A2926 at 3369.630 kb on + strand, within Rru_A2926 at 3369.631 kb on - strand, within Rru_A2926 at 3369.696 kb on + strand, within Rru_A2926
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 3,366,486 + +1.2 3,366,486 + +0.5 3,366,486 + +0.1 3,366,495 - +0.4 3,366,660 + Rru_A2924 0.21 +0.2 3,366,722 + Rru_A2924 0.29 +0.2 3,366,722 + Rru_A2924 0.29 +0.1 3,366,722 + Rru_A2924 0.29 +0.7 3,366,723 - Rru_A2924 0.29 -0.3 3,366,972 - Rru_A2924 0.61 -0.2 3,366,972 - Rru_A2924 0.61 -1.7 3,366,972 - Rru_A2924 0.61 +1.3 3,366,972 - Rru_A2924 0.61 +0.3 3,367,284 + +0.5 3,367,285 - +0.5 3,367,340 + +0.1 3,367,340 + -0.2 3,367,341 - -0.1 3,367,380 + -1.0 3,367,380 + +0.9 3,367,498 - +0.2 3,367,711 + Rru_A2925 0.20 +1.3 3,368,359 + Rru_A2925 0.71 -2.3 3,368,359 + Rru_A2925 0.71 +1.1 3,368,359 + Rru_A2925 0.71 +0.9 3,368,360 - Rru_A2925 0.71 +1.5 3,368,360 - Rru_A2925 0.71 -0.5 3,368,360 - Rru_A2925 0.71 +0.2 3,368,360 - Rru_A2925 0.71 -1.5 3,368,793 + -1.5 3,368,793 + -0.6 3,368,794 - -1.1 3,368,794 - -0.7 3,368,834 + -0.5 3,368,835 - +0.1 3,368,835 - -0.2 3,369,508 + Rru_A2926 0.55 +0.2 3,369,508 + Rru_A2926 0.55 +1.2 3,369,509 - Rru_A2926 0.55 -0.2 3,369,509 - Rru_A2926 0.55 +0.9 3,369,509 - Rru_A2926 0.55 -0.4 3,369,630 + Rru_A2926 0.63 +1.2 3,369,630 + Rru_A2926 0.63 -0.3 3,369,631 - Rru_A2926 0.64 +0.5 3,369,696 + Rru_A2926 0.68 -0.2
Or see this region's nucleotide sequence