Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2925

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2923 and Rru_A2924 are separated by 4 nucleotidesRru_A2924 and Rru_A2925 are separated by 173 nucleotidesRru_A2925 and Rru_A2926 overlap by 4 nucleotides Rru_A2923: Rru_A2923 - hypothetical protein (NCBI), at 3,365,295 to 3,366,488 _A2923 Rru_A2924: Rru_A2924 - Glycosyl transferase, family 2 (NCBI), at 3,366,493 to 3,367,281 _A2924 Rru_A2925: Rru_A2925 - Major facilitator superfamily MFS_1 (NCBI), at 3,367,455 to 3,368,732 _A2925 Rru_A2926: Rru_A2926 - RND efflux system, outer membrane lipoprotein, NodT (NCBI), at 3,368,729 to 3,370,147 _A2926 Position (kb) 3367 3368 3369Strain fitness (log2 ratio) -2 -1 0 1at 3366.486 kb on + strandat 3366.486 kb on + strandat 3366.486 kb on + strandat 3366.495 kb on - strandat 3366.660 kb on + strand, within Rru_A2924at 3366.722 kb on + strand, within Rru_A2924at 3366.722 kb on + strand, within Rru_A2924at 3366.722 kb on + strand, within Rru_A2924at 3366.723 kb on - strand, within Rru_A2924at 3366.972 kb on - strand, within Rru_A2924at 3366.972 kb on - strand, within Rru_A2924at 3366.972 kb on - strand, within Rru_A2924at 3366.972 kb on - strand, within Rru_A2924at 3367.284 kb on + strandat 3367.285 kb on - strandat 3367.340 kb on + strandat 3367.340 kb on + strandat 3367.341 kb on - strandat 3367.380 kb on + strandat 3367.380 kb on + strandat 3367.498 kb on - strandat 3367.711 kb on + strand, within Rru_A2925at 3368.359 kb on + strand, within Rru_A2925at 3368.359 kb on + strand, within Rru_A2925at 3368.359 kb on + strand, within Rru_A2925at 3368.360 kb on - strand, within Rru_A2925at 3368.360 kb on - strand, within Rru_A2925at 3368.360 kb on - strand, within Rru_A2925at 3368.360 kb on - strand, within Rru_A2925at 3368.793 kb on + strandat 3368.793 kb on + strandat 3368.794 kb on - strandat 3368.794 kb on - strandat 3368.834 kb on + strandat 3368.835 kb on - strandat 3368.835 kb on - strandat 3369.508 kb on + strand, within Rru_A2926at 3369.508 kb on + strand, within Rru_A2926at 3369.509 kb on - strand, within Rru_A2926at 3369.509 kb on - strand, within Rru_A2926at 3369.509 kb on - strand, within Rru_A2926at 3369.630 kb on + strand, within Rru_A2926at 3369.630 kb on + strand, within Rru_A2926at 3369.631 kb on - strand, within Rru_A2926at 3369.696 kb on + strand, within Rru_A2926

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,366,486 + +1.2
3,366,486 + +0.5
3,366,486 + +0.1
3,366,495 - +0.4
3,366,660 + Rru_A2924 0.21 +0.2
3,366,722 + Rru_A2924 0.29 +0.2
3,366,722 + Rru_A2924 0.29 +0.1
3,366,722 + Rru_A2924 0.29 +0.7
3,366,723 - Rru_A2924 0.29 -0.3
3,366,972 - Rru_A2924 0.61 -0.2
3,366,972 - Rru_A2924 0.61 -1.7
3,366,972 - Rru_A2924 0.61 +1.3
3,366,972 - Rru_A2924 0.61 +0.3
3,367,284 + +0.5
3,367,285 - +0.5
3,367,340 + +0.1
3,367,340 + -0.2
3,367,341 - -0.1
3,367,380 + -1.0
3,367,380 + +0.9
3,367,498 - +0.2
3,367,711 + Rru_A2925 0.20 +1.3
3,368,359 + Rru_A2925 0.71 -2.3
3,368,359 + Rru_A2925 0.71 +1.1
3,368,359 + Rru_A2925 0.71 +0.9
3,368,360 - Rru_A2925 0.71 +1.5
3,368,360 - Rru_A2925 0.71 -0.5
3,368,360 - Rru_A2925 0.71 +0.2
3,368,360 - Rru_A2925 0.71 -1.5
3,368,793 + -1.5
3,368,793 + -0.6
3,368,794 - -1.1
3,368,794 - -0.7
3,368,834 + -0.5
3,368,835 - +0.1
3,368,835 - -0.2
3,369,508 + Rru_A2926 0.55 +0.2
3,369,508 + Rru_A2926 0.55 +1.2
3,369,509 - Rru_A2926 0.55 -0.2
3,369,509 - Rru_A2926 0.55 +0.9
3,369,509 - Rru_A2926 0.55 -0.4
3,369,630 + Rru_A2926 0.63 +1.2
3,369,630 + Rru_A2926 0.63 -0.3
3,369,631 - Rru_A2926 0.64 +0.5
3,369,696 + Rru_A2926 0.68 -0.2

Or see this region's nucleotide sequence