Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2859

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2858 and Rru_A2859 are separated by 286 nucleotidesRru_A2859 and Rru_A2860 are separated by 35 nucleotidesRru_A2860 and Rru_A2861 overlap by 4 nucleotides Rru_A2858: Rru_A2858 - Flagellin-like (NCBI), at 3,290,935 to 3,291,804 _A2858 Rru_A2859: Rru_A2859 - hypothetical protein (NCBI), at 3,292,091 to 3,294,445 _A2859 Rru_A2860: Rru_A2860 - hypothetical protein (NCBI), at 3,294,481 to 3,295,125 _A2860 Rru_A2861: Rru_A2861 - hypothetical protein (NCBI), at 3,295,122 to 3,295,700 _A2861 Position (kb) 3292 3293 3294 3295Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3291.138 kb on + strand, within Rru_A2858at 3291.138 kb on + strand, within Rru_A2858at 3291.219 kb on - strand, within Rru_A2858at 3291.235 kb on - strand, within Rru_A2858at 3291.407 kb on + strand, within Rru_A2858at 3291.407 kb on + strand, within Rru_A2858at 3291.407 kb on + strand, within Rru_A2858at 3291.407 kb on + strand, within Rru_A2858at 3291.408 kb on - strand, within Rru_A2858at 3291.408 kb on - strand, within Rru_A2858at 3291.408 kb on - strand, within Rru_A2858at 3291.411 kb on + strand, within Rru_A2858at 3291.412 kb on - strand, within Rru_A2858at 3291.412 kb on - strand, within Rru_A2858at 3291.412 kb on - strand, within Rru_A2858at 3291.501 kb on + strand, within Rru_A2858at 3291.502 kb on - strand, within Rru_A2858at 3291.502 kb on - strand, within Rru_A2858at 3291.640 kb on - strand, within Rru_A2858at 3291.789 kb on + strandat 3291.789 kb on + strandat 3291.790 kb on - strandat 3291.790 kb on - strandat 3291.790 kb on - strandat 3291.790 kb on - strandat 3291.804 kb on + strandat 3291.804 kb on + strandat 3291.805 kb on - strandat 3291.807 kb on + strandat 3291.807 kb on + strandat 3291.807 kb on + strandat 3291.807 kb on + strandat 3291.807 kb on + strandat 3291.807 kb on + strandat 3291.808 kb on - strandat 3291.808 kb on - strandat 3291.808 kb on - strandat 3291.808 kb on - strandat 3291.808 kb on - strandat 3291.821 kb on + strandat 3291.822 kb on - strandat 3291.940 kb on + strandat 3291.940 kb on + strandat 3291.941 kb on - strandat 3291.941 kb on - strandat 3291.946 kb on + strandat 3291.946 kb on + strandat 3291.946 kb on + strandat 3291.947 kb on - strandat 3291.947 kb on - strandat 3291.995 kb on + strandat 3291.995 kb on + strandat 3291.995 kb on + strandat 3291.995 kb on + strandat 3291.996 kb on - strandat 3291.996 kb on - strandat 3291.997 kb on + strandat 3291.998 kb on - strandat 3291.998 kb on - strandat 3291.998 kb on - strandat 3291.998 kb on - strandat 3292.161 kb on + strandat 3292.161 kb on + strandat 3292.162 kb on - strandat 3292.162 kb on - strandat 3292.162 kb on - strandat 3293.037 kb on - strand, within Rru_A2859at 3293.159 kb on + strand, within Rru_A2859at 3293.160 kb on - strand, within Rru_A2859at 3293.160 kb on - strand, within Rru_A2859at 3293.168 kb on + strand, within Rru_A2859at 3293.169 kb on - strand, within Rru_A2859at 3293.217 kb on + strand, within Rru_A2859at 3293.341 kb on + strand, within Rru_A2859at 3293.341 kb on + strand, within Rru_A2859at 3293.342 kb on - strand, within Rru_A2859at 3293.540 kb on + strand, within Rru_A2859at 3293.540 kb on + strand, within Rru_A2859at 3293.567 kb on - strand, within Rru_A2859at 3293.703 kb on - strand, within Rru_A2859at 3293.703 kb on - strand, within Rru_A2859at 3293.703 kb on - strand, within Rru_A2859at 3293.703 kb on - strand, within Rru_A2859at 3293.858 kb on + strand, within Rru_A2859at 3293.858 kb on + strand, within Rru_A2859at 3293.858 kb on + strand, within Rru_A2859at 3293.859 kb on - strand, within Rru_A2859at 3293.859 kb on - strand, within Rru_A2859at 3294.050 kb on + strand, within Rru_A2859at 3294.245 kb on + strandat 3294.245 kb on + strandat 3294.245 kb on + strandat 3294.245 kb on + strandat 3294.245 kb on + strandat 3294.246 kb on - strandat 3294.246 kb on - strandat 3294.246 kb on - strandat 3294.246 kb on - strandat 3294.246 kb on - strandat 3294.246 kb on - strandat 3294.460 kb on + strandat 3294.460 kb on + strandat 3294.460 kb on + strandat 3294.557 kb on + strand, within Rru_A2860at 3294.557 kb on + strand, within Rru_A2860at 3294.557 kb on + strand, within Rru_A2860at 3294.557 kb on + strand, within Rru_A2860at 3294.558 kb on - strand, within Rru_A2860at 3294.623 kb on - strand, within Rru_A2860at 3294.679 kb on - strand, within Rru_A2860at 3295.039 kb on + strand, within Rru_A2860at 3295.039 kb on + strand, within Rru_A2860at 3295.040 kb on - strand, within Rru_A2860

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,291,138 + Rru_A2858 0.23 -0.7
3,291,138 + Rru_A2858 0.23 -0.7
3,291,219 - Rru_A2858 0.33 -0.0
3,291,235 - Rru_A2858 0.34 -0.1
3,291,407 + Rru_A2858 0.54 +1.1
3,291,407 + Rru_A2858 0.54 -0.3
3,291,407 + Rru_A2858 0.54 +0.2
3,291,407 + Rru_A2858 0.54 -0.5
3,291,408 - Rru_A2858 0.54 +0.1
3,291,408 - Rru_A2858 0.54 -0.2
3,291,408 - Rru_A2858 0.54 +0.5
3,291,411 + Rru_A2858 0.55 +0.3
3,291,412 - Rru_A2858 0.55 -0.0
3,291,412 - Rru_A2858 0.55 +0.4
3,291,412 - Rru_A2858 0.55 +0.2
3,291,501 + Rru_A2858 0.65 +0.4
3,291,502 - Rru_A2858 0.65 +0.3
3,291,502 - Rru_A2858 0.65 +0.1
3,291,640 - Rru_A2858 0.81 -0.0
3,291,789 + +0.8
3,291,789 + +1.3
3,291,790 - +0.7
3,291,790 - +1.1
3,291,790 - -0.9
3,291,790 - +0.1
3,291,804 + +0.4
3,291,804 + -0.0
3,291,805 - -0.5
3,291,807 + -0.3
3,291,807 + -1.4
3,291,807 + +1.7
3,291,807 + -1.1
3,291,807 + -0.9
3,291,807 + +1.6
3,291,808 - -0.6
3,291,808 - +0.6
3,291,808 - -0.1
3,291,808 - -1.0
3,291,808 - -0.6
3,291,821 + -0.7
3,291,822 - -1.9
3,291,940 + -0.8
3,291,940 + -0.1
3,291,941 - -0.5
3,291,941 - +0.9
3,291,946 + -0.4
3,291,946 + -0.1
3,291,946 + +0.5
3,291,947 - -0.7
3,291,947 - -0.2
3,291,995 + +0.2
3,291,995 + -0.9
3,291,995 + +1.2
3,291,995 + +0.7
3,291,996 - -0.0
3,291,996 - +0.6
3,291,997 + +0.2
3,291,998 - -0.5
3,291,998 - -0.8
3,291,998 - -0.1
3,291,998 - -0.2
3,292,161 + +0.9
3,292,161 + +0.1
3,292,162 - -1.8
3,292,162 - -0.1
3,292,162 - +0.9
3,293,037 - Rru_A2859 0.40 -1.2
3,293,159 + Rru_A2859 0.45 +0.1
3,293,160 - Rru_A2859 0.45 -0.8
3,293,160 - Rru_A2859 0.45 -0.4
3,293,168 + Rru_A2859 0.46 -0.8
3,293,169 - Rru_A2859 0.46 +0.1
3,293,217 + Rru_A2859 0.48 +1.3
3,293,341 + Rru_A2859 0.53 -0.2
3,293,341 + Rru_A2859 0.53 -0.4
3,293,342 - Rru_A2859 0.53 +0.9
3,293,540 + Rru_A2859 0.62 -0.4
3,293,540 + Rru_A2859 0.62 -3.9
3,293,567 - Rru_A2859 0.63 +0.2
3,293,703 - Rru_A2859 0.68 +1.1
3,293,703 - Rru_A2859 0.68 -0.1
3,293,703 - Rru_A2859 0.68 +0.4
3,293,703 - Rru_A2859 0.68 -1.7
3,293,858 + Rru_A2859 0.75 -1.6
3,293,858 + Rru_A2859 0.75 -1.5
3,293,858 + Rru_A2859 0.75 +0.1
3,293,859 - Rru_A2859 0.75 -0.3
3,293,859 - Rru_A2859 0.75 -0.2
3,294,050 + Rru_A2859 0.83 -0.1
3,294,245 + -0.2
3,294,245 + +0.2
3,294,245 + -0.2
3,294,245 + +0.3
3,294,245 + +0.4
3,294,246 - -0.7
3,294,246 - -0.7
3,294,246 - +0.1
3,294,246 - +0.5
3,294,246 - -1.2
3,294,246 - -1.1
3,294,460 + +2.5
3,294,460 + -2.6
3,294,460 + +0.2
3,294,557 + Rru_A2860 0.12 +0.2
3,294,557 + Rru_A2860 0.12 -0.1
3,294,557 + Rru_A2860 0.12 +0.2
3,294,557 + Rru_A2860 0.12 +0.2
3,294,558 - Rru_A2860 0.12 +0.1
3,294,623 - Rru_A2860 0.22 +0.1
3,294,679 - Rru_A2860 0.31 -0.0
3,295,039 + Rru_A2860 0.87 +0.1
3,295,039 + Rru_A2860 0.87 -0.0
3,295,040 - Rru_A2860 0.87 -1.7

Or see this region's nucleotide sequence