Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2813

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2811 and Rru_A2812 overlap by 17 nucleotidesRru_A2812 and Rru_A2813 are separated by 44 nucleotidesRru_A2813 and Rru_A2814 are separated by 108 nucleotidesRru_A2814 and Rru_A2815 are separated by 4 nucleotidesRru_A2815 and Rru_A2816 are separated by 136 nucleotides Rru_A2811: Rru_A2811 - hypothetical protein (NCBI), at 3,244,402 to 3,245,727 _A2811 Rru_A2812: Rru_A2812 - molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI), at 3,245,711 to 3,246,382 _A2812 Rru_A2813: Rru_A2813 - Molybdopterin cofactor biosynthesis MoaC region (NCBI), at 3,246,427 to 3,246,927 _A2813 Rru_A2814: Rru_A2814 - Molybdopterin converting factor, subunit 1 (NCBI), at 3,247,036 to 3,247,287 _A2814 Rru_A2815: Rru_A2815 - Molybdopterin biosynthesis MoaE (NCBI), at 3,247,292 to 3,247,780 _A2815 Rru_A2816: Rru_A2816 - Transcriptional Regulator, TetR family (NCBI), at 3,247,917 to 3,248,495 _A2816 Position (kb) 3246 3247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3245.692 kb on + strandat 3245.692 kb on + strandat 3245.692 kb on + strandat 3245.693 kb on - strandat 3245.693 kb on - strandat 3245.693 kb on - strandat 3246.304 kb on + strand, within Rru_A2812at 3246.304 kb on + strand, within Rru_A2812at 3246.305 kb on - strand, within Rru_A2812at 3246.829 kb on + strand, within Rru_A2813at 3246.829 kb on + strand, within Rru_A2813at 3246.830 kb on - strand, within Rru_A2813at 3246.830 kb on - strand, within Rru_A2813at 3246.830 kb on - strand, within Rru_A2813at 3246.830 kb on - strand, within Rru_A2813at 3246.830 kb on - strand, within Rru_A2813at 3246.852 kb on + strand, within Rru_A2813at 3247.048 kb on + strandat 3247.048 kb on + strandat 3247.049 kb on - strandat 3247.049 kb on - strandat 3247.049 kb on - strandat 3247.094 kb on + strand, within Rru_A2814at 3247.094 kb on + strand, within Rru_A2814at 3247.095 kb on - strand, within Rru_A2814at 3247.095 kb on - strand, within Rru_A2814at 3247.460 kb on + strand, within Rru_A2815

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,245,692 + -0.4
3,245,692 + -2.0
3,245,692 + -4.3
3,245,693 - -0.7
3,245,693 - -0.9
3,245,693 - +0.8
3,246,304 + Rru_A2812 0.88 -1.4
3,246,304 + Rru_A2812 0.88 -1.5
3,246,305 - Rru_A2812 0.88 +0.6
3,246,829 + Rru_A2813 0.80 -1.7
3,246,829 + Rru_A2813 0.80 -3.0
3,246,830 - Rru_A2813 0.80 -0.5
3,246,830 - Rru_A2813 0.80 -2.7
3,246,830 - Rru_A2813 0.80 -1.3
3,246,830 - Rru_A2813 0.80 +0.3
3,246,830 - Rru_A2813 0.80 +0.4
3,246,852 + Rru_A2813 0.85 -1.9
3,247,048 + -1.3
3,247,048 + +1.3
3,247,049 - -0.9
3,247,049 - +0.3
3,247,049 - +0.4
3,247,094 + Rru_A2814 0.23 +0.1
3,247,094 + Rru_A2814 0.23 -0.7
3,247,095 - Rru_A2814 0.23 +0.4
3,247,095 - Rru_A2814 0.23 -0.1
3,247,460 + Rru_A2815 0.34 -2.0

Or see this region's nucleotide sequence