Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2798

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2796 and Rru_A2797 are separated by 47 nucleotidesRru_A2797 and Rru_A2798 overlap by 1 nucleotidesRru_A2798 and Rru_A2799 are separated by 65 nucleotidesRru_A2799 and Rru_A2800 are separated by 249 nucleotides Rru_A2796: Rru_A2796 - Heavy metal translocatin P-type ATPase (NCBI), at 3,229,705 to 3,231,861 _A2796 Rru_A2797: Rru_A2797 - hypothetical protein (NCBI), at 3,231,909 to 3,232,541 _A2797 Rru_A2798: Rru_A2798 - hypothetical protein (NCBI), at 3,232,541 to 3,232,906 _A2798 Rru_A2799: Rru_A2799 - hypothetical protein (NCBI), at 3,232,972 to 3,233,301 _A2799 Rru_A2800: Rru_A2800 - hypothetical protein (NCBI), at 3,233,551 to 3,234,003 _A2800 Position (kb) 3232 3233Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3231.767 kb on + strandat 3231.767 kb on + strandat 3231.767 kb on + strandat 3231.768 kb on - strandat 3231.779 kb on + strandat 3231.819 kb on + strandat 3231.821 kb on + strandat 3231.821 kb on + strandat 3231.822 kb on - strandat 3231.822 kb on - strandat 3231.890 kb on + strandat 3231.890 kb on + strandat 3231.891 kb on - strandat 3231.891 kb on - strandat 3232.237 kb on + strand, within Rru_A2797at 3232.265 kb on - strand, within Rru_A2797at 3232.321 kb on + strand, within Rru_A2797at 3232.327 kb on + strand, within Rru_A2797at 3232.327 kb on + strand, within Rru_A2797at 3232.327 kb on + strand, within Rru_A2797at 3232.328 kb on - strand, within Rru_A2797at 3232.328 kb on - strand, within Rru_A2797at 3232.340 kb on - strand, within Rru_A2797at 3232.340 kb on - strand, within Rru_A2797at 3232.599 kb on + strand, within Rru_A2798at 3232.599 kb on + strand, within Rru_A2798at 3232.604 kb on + strand, within Rru_A2798at 3232.605 kb on - strand, within Rru_A2798at 3232.973 kb on + strandat 3232.973 kb on + strandat 3232.973 kb on + strandat 3232.973 kb on + strandat 3232.974 kb on - strandat 3233.072 kb on + strand, within Rru_A2799at 3233.072 kb on + strand, within Rru_A2799at 3233.073 kb on - strand, within Rru_A2799at 3233.073 kb on - strand, within Rru_A2799at 3233.296 kb on - strandat 3233.296 kb on - strandat 3233.316 kb on + strandat 3233.316 kb on + strandat 3233.317 kb on - strandat 3233.317 kb on - strandat 3233.363 kb on + strandat 3233.364 kb on - strandat 3233.534 kb on - strandat 3233.716 kb on + strand, within Rru_A2800at 3233.774 kb on - strand, within Rru_A2800at 3233.774 kb on - strand, within Rru_A2800at 3233.904 kb on + strand, within Rru_A2800

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,231,767 + -1.6
3,231,767 + +0.4
3,231,767 + -1.0
3,231,768 - -3.2
3,231,779 + +1.3
3,231,819 + +2.1
3,231,821 + +0.7
3,231,821 + -0.3
3,231,822 - -0.0
3,231,822 - +0.6
3,231,890 + +0.7
3,231,890 + -1.4
3,231,891 - +1.1
3,231,891 - -0.9
3,232,237 + Rru_A2797 0.52 +0.3
3,232,265 - Rru_A2797 0.56 +0.4
3,232,321 + Rru_A2797 0.65 -0.9
3,232,327 + Rru_A2797 0.66 -0.2
3,232,327 + Rru_A2797 0.66 +0.1
3,232,327 + Rru_A2797 0.66 -0.6
3,232,328 - Rru_A2797 0.66 -0.4
3,232,328 - Rru_A2797 0.66 -0.5
3,232,340 - Rru_A2797 0.68 -0.5
3,232,340 - Rru_A2797 0.68 +0.8
3,232,599 + Rru_A2798 0.16 -1.0
3,232,599 + Rru_A2798 0.16 -3.3
3,232,604 + Rru_A2798 0.17 -2.5
3,232,605 - Rru_A2798 0.17 -1.6
3,232,973 + -0.3
3,232,973 + +0.6
3,232,973 + +0.6
3,232,973 + +0.6
3,232,974 - -0.5
3,233,072 + Rru_A2799 0.30 +2.1
3,233,072 + Rru_A2799 0.30 +0.3
3,233,073 - Rru_A2799 0.31 +0.5
3,233,073 - Rru_A2799 0.31 -0.1
3,233,296 - -1.7
3,233,296 - -1.3
3,233,316 + -0.9
3,233,316 + -0.6
3,233,317 - -1.0
3,233,317 - +1.0
3,233,363 + +1.0
3,233,364 - +0.1
3,233,534 - -0.7
3,233,716 + Rru_A2800 0.36 +0.9
3,233,774 - Rru_A2800 0.49 +3.3
3,233,774 - Rru_A2800 0.49 -0.4
3,233,904 + Rru_A2800 0.78 -1.1

Or see this region's nucleotide sequence