Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2496

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2494 and Rru_A2495 overlap by 4 nucleotidesRru_A2495 and Rru_A2496 overlap by 4 nucleotidesRru_A2496 and Rru_A2497 are separated by 58 nucleotides Rru_A2494: Rru_A2494 - Glycosyl transferase, family 2 (NCBI), at 2,900,277 to 2,901,245 _A2494 Rru_A2495: Rru_A2495 - Glycosyl transferase, family 2 (NCBI), at 2,901,242 to 2,902,219 _A2495 Rru_A2496: Rru_A2496 - Polysaccharide biosynthesis protein (NCBI), at 2,902,216 to 2,903,487 _A2496 Rru_A2497: Rru_A2497 - Peptide chain release factor 3 (NCBI), at 2,903,546 to 2,905,138 _A2497 Position (kb) 2902 2903 2904Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2901.886 kb on - strand, within Rru_A2495at 2902.177 kb on - strandat 2902.260 kb on + strandat 2902.263 kb on + strandat 2902.467 kb on - strand, within Rru_A2496at 2902.503 kb on + strand, within Rru_A2496at 2902.734 kb on - strand, within Rru_A2496at 2902.749 kb on + strand, within Rru_A2496at 2902.883 kb on + strand, within Rru_A2496at 2902.883 kb on + strand, within Rru_A2496at 2903.019 kb on - strand, within Rru_A2496at 2903.273 kb on + strand, within Rru_A2496at 2903.569 kb on + strandat 2904.112 kb on + strand, within Rru_A2497at 2904.112 kb on + strand, within Rru_A2497at 2904.113 kb on - strand, within Rru_A2497at 2904.113 kb on - strand, within Rru_A2497at 2904.224 kb on - strand, within Rru_A2497at 2904.224 kb on - strand, within Rru_A2497at 2904.224 kb on - strand, within Rru_A2497

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,901,886 - Rru_A2495 0.66 +0.4
2,902,177 - -2.1
2,902,260 + -0.6
2,902,263 + +2.4
2,902,467 - Rru_A2496 0.20 -1.7
2,902,503 + Rru_A2496 0.23 -1.4
2,902,734 - Rru_A2496 0.41 -1.0
2,902,749 + Rru_A2496 0.42 -0.4
2,902,883 + Rru_A2496 0.52 -3.2
2,902,883 + Rru_A2496 0.52 +1.7
2,903,019 - Rru_A2496 0.63 -0.8
2,903,273 + Rru_A2496 0.83 -1.4
2,903,569 + -0.9
2,904,112 + Rru_A2497 0.36 -2.1
2,904,112 + Rru_A2497 0.36 -3.4
2,904,113 - Rru_A2497 0.36 -3.0
2,904,113 - Rru_A2497 0.36 +1.6
2,904,224 - Rru_A2497 0.43 +0.0
2,904,224 - Rru_A2497 0.43 -2.1
2,904,224 - Rru_A2497 0.43 -4.6

Or see this region's nucleotide sequence