Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2321

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2320 and Rru_A2321 are separated by 734 nucleotidesRru_A2321 and Rru_A2322 are separated by 30 nucleotides Rru_A2320: Rru_A2320 - Ankyrin (NCBI), at 2,688,282 to 2,689,202 _A2320 Rru_A2321: Rru_A2321 - chemotaxis sensory transducer (NCBI), at 2,689,937 to 2,691,865 _A2321 Rru_A2322: Rru_A2322 - CheW protein (NCBI), at 2,691,896 to 2,693,497 _A2322 Position (kb) 2689 2690 2691 2692Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2688.985 kb on - strand, within Rru_A2320at 2689.047 kb on + strand, within Rru_A2320at 2689.048 kb on - strand, within Rru_A2320at 2689.048 kb on - strand, within Rru_A2320at 2689.116 kb on + strandat 2689.117 kb on - strandat 2689.140 kb on + strandat 2689.141 kb on - strandat 2689.141 kb on - strandat 2689.141 kb on - strandat 2689.647 kb on + strandat 2690.554 kb on + strand, within Rru_A2321at 2690.645 kb on - strand, within Rru_A2321at 2690.869 kb on + strand, within Rru_A2321at 2690.870 kb on - strand, within Rru_A2321at 2691.371 kb on - strand, within Rru_A2321at 2691.371 kb on - strand, within Rru_A2321at 2691.371 kb on - strand, within Rru_A2321at 2691.371 kb on - strand, within Rru_A2321at 2691.371 kb on - strand, within Rru_A2321at 2691.371 kb on - strand, within Rru_A2321at 2691.491 kb on - strand, within Rru_A2321at 2691.491 kb on - strand, within Rru_A2321at 2691.556 kb on - strand, within Rru_A2321at 2691.556 kb on - strand, within Rru_A2321at 2691.883 kb on + strandat 2691.883 kb on + strandat 2691.883 kb on + strandat 2691.884 kb on - strandat 2691.884 kb on - strandat 2691.884 kb on - strandat 2691.884 kb on - strandat 2691.884 kb on - strandat 2691.894 kb on + strandat 2691.894 kb on + strandat 2691.894 kb on + strandat 2691.894 kb on + strandat 2691.894 kb on + strandat 2691.894 kb on + strandat 2691.894 kb on + strandat 2691.894 kb on + strandat 2691.894 kb on + strandat 2691.895 kb on - strandat 2691.895 kb on - strandat 2691.895 kb on - strandat 2691.895 kb on - strandat 2691.895 kb on - strandat 2691.895 kb on - strandat 2691.895 kb on - strandat 2692.285 kb on + strand, within Rru_A2322at 2692.544 kb on + strand, within Rru_A2322at 2692.545 kb on - strand, within Rru_A2322

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,688,985 - Rru_A2320 0.76 -3.0
2,689,047 + Rru_A2320 0.83 -2.0
2,689,048 - Rru_A2320 0.83 +0.3
2,689,048 - Rru_A2320 0.83 -0.2
2,689,116 + +0.0
2,689,117 - -0.7
2,689,140 + +1.5
2,689,141 - -0.0
2,689,141 - +0.3
2,689,141 - -0.0
2,689,647 + +1.2
2,690,554 + Rru_A2321 0.32 +1.9
2,690,645 - Rru_A2321 0.37 +0.9
2,690,869 + Rru_A2321 0.48 -0.3
2,690,870 - Rru_A2321 0.48 +0.1
2,691,371 - Rru_A2321 0.74 -0.2
2,691,371 - Rru_A2321 0.74 +0.0
2,691,371 - Rru_A2321 0.74 +0.3
2,691,371 - Rru_A2321 0.74 -1.4
2,691,371 - Rru_A2321 0.74 +0.1
2,691,371 - Rru_A2321 0.74 +0.0
2,691,491 - Rru_A2321 0.81 +0.4
2,691,491 - Rru_A2321 0.81 -0.6
2,691,556 - Rru_A2321 0.84 +0.3
2,691,556 - Rru_A2321 0.84 +0.3
2,691,883 + -1.7
2,691,883 + -0.0
2,691,883 + +0.8
2,691,884 - +0.5
2,691,884 - -0.3
2,691,884 - +0.6
2,691,884 - -2.7
2,691,884 - -0.5
2,691,894 + +0.0
2,691,894 + +1.0
2,691,894 + +0.2
2,691,894 + -0.5
2,691,894 + -0.1
2,691,894 + -2.9
2,691,894 + -0.2
2,691,894 + -2.0
2,691,894 + +1.4
2,691,895 - +0.9
2,691,895 - +0.2
2,691,895 - +1.4
2,691,895 - -1.1
2,691,895 - -0.5
2,691,895 - -0.1
2,691,895 - +0.3
2,692,285 + Rru_A2322 0.24 -1.3
2,692,544 + Rru_A2322 0.40 -0.3
2,692,545 - Rru_A2322 0.41 +0.7

Or see this region's nucleotide sequence