Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2200

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2199 and Rru_A2200 are separated by 131 nucleotidesRru_A2200 and Rru_A2201 are separated by 101 nucleotides Rru_A2199: Rru_A2199 - hypothetical protein (NCBI), at 2,552,871 to 2,554,577 _A2199 Rru_A2200: Rru_A2200 - DNA polymerase III chi subunit, HolC (NCBI), at 2,554,709 to 2,555,191 _A2200 Rru_A2201: Rru_A2201 - Peptidase S1C, Do (NCBI), at 2,555,293 to 2,556,819 _A2201 Position (kb) 2554 2555 2556Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2554.090 kb on + strand, within Rru_A2199at 2554.090 kb on + strand, within Rru_A2199at 2554.090 kb on + strand, within Rru_A2199at 2554.090 kb on + strand, within Rru_A2199at 2554.091 kb on - strand, within Rru_A2199at 2554.091 kb on - strand, within Rru_A2199at 2554.091 kb on - strand, within Rru_A2199at 2554.091 kb on - strand, within Rru_A2199at 2554.091 kb on - strand, within Rru_A2199at 2554.261 kb on + strand, within Rru_A2199at 2554.262 kb on - strand, within Rru_A2199at 2554.262 kb on - strand, within Rru_A2199at 2554.306 kb on + strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.307 kb on - strand, within Rru_A2199at 2554.477 kb on + strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.478 kb on - strandat 2554.519 kb on + strandat 2554.568 kb on - strandat 2554.568 kb on - strandat 2554.584 kb on - strandat 2554.615 kb on + strandat 2554.616 kb on - strandat 2554.629 kb on + strandat 2554.630 kb on - strandat 2554.665 kb on - strandat 2554.666 kb on + strandat 2554.666 kb on + strandat 2554.667 kb on - strandat 2554.667 kb on - strandat 2554.685 kb on + strandat 2554.685 kb on + strandat 2554.685 kb on + strandat 2554.710 kb on + strandat 2554.717 kb on + strandat 2554.718 kb on - strandat 2554.718 kb on - strandat 2554.785 kb on + strand, within Rru_A2200at 2554.785 kb on + strand, within Rru_A2200at 2554.785 kb on + strand, within Rru_A2200at 2554.786 kb on - strand, within Rru_A2200at 2555.165 kb on + strandat 2555.165 kb on + strandat 2555.172 kb on + strandat 2555.173 kb on - strandat 2555.202 kb on + strandat 2555.202 kb on + strandat 2555.295 kb on - strandat 2556.067 kb on - strand, within Rru_A2201at 2556.123 kb on + strand, within Rru_A2201at 2556.158 kb on + strand, within Rru_A2201at 2556.158 kb on + strand, within Rru_A2201at 2556.158 kb on + strand, within Rru_A2201at 2556.159 kb on - strand, within Rru_A2201at 2556.159 kb on - strand, within Rru_A2201

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,554,090 + Rru_A2199 0.71 -0.1
2,554,090 + Rru_A2199 0.71 -0.5
2,554,090 + Rru_A2199 0.71 -0.3
2,554,090 + Rru_A2199 0.71 -2.2
2,554,091 - Rru_A2199 0.71 +0.1
2,554,091 - Rru_A2199 0.71 +1.3
2,554,091 - Rru_A2199 0.71 -3.4
2,554,091 - Rru_A2199 0.71 -0.3
2,554,091 - Rru_A2199 0.71 -3.6
2,554,261 + Rru_A2199 0.81 -0.7
2,554,262 - Rru_A2199 0.81 -0.8
2,554,262 - Rru_A2199 0.81 +0.0
2,554,306 + Rru_A2199 0.84 -1.9
2,554,307 - Rru_A2199 0.84 +0.6
2,554,307 - Rru_A2199 0.84 +0.9
2,554,307 - Rru_A2199 0.84 -0.5
2,554,307 - Rru_A2199 0.84 -0.1
2,554,307 - Rru_A2199 0.84 -0.5
2,554,307 - Rru_A2199 0.84 -2.2
2,554,307 - Rru_A2199 0.84 -0.8
2,554,477 + -0.3
2,554,478 - -0.3
2,554,478 - +1.0
2,554,478 - +0.2
2,554,478 - -0.7
2,554,478 - +0.1
2,554,478 - +0.9
2,554,478 - +0.9
2,554,478 - -0.4
2,554,478 - +1.7
2,554,478 - +0.2
2,554,519 + -0.7
2,554,568 - -1.1
2,554,568 - -1.1
2,554,584 - -0.6
2,554,615 + -0.8
2,554,616 - -0.3
2,554,629 + -0.8
2,554,630 - -1.4
2,554,665 - +1.4
2,554,666 + -1.0
2,554,666 + -0.7
2,554,667 - +0.7
2,554,667 - -0.1
2,554,685 + +0.7
2,554,685 + +0.3
2,554,685 + +0.1
2,554,710 + -4.6
2,554,717 + -1.4
2,554,718 - -1.6
2,554,718 - +0.5
2,554,785 + Rru_A2200 0.16 -4.1
2,554,785 + Rru_A2200 0.16 -3.4
2,554,785 + Rru_A2200 0.16 -2.5
2,554,786 - Rru_A2200 0.16 -2.4
2,555,165 + -1.9
2,555,165 + -1.5
2,555,172 + -1.0
2,555,173 - +0.9
2,555,202 + -1.7
2,555,202 + -2.9
2,555,295 - -1.2
2,556,067 - Rru_A2201 0.51 -0.7
2,556,123 + Rru_A2201 0.54 -1.7
2,556,158 + Rru_A2201 0.57 +0.5
2,556,158 + Rru_A2201 0.57 -1.9
2,556,158 + Rru_A2201 0.57 -0.0
2,556,159 - Rru_A2201 0.57 -0.4
2,556,159 - Rru_A2201 0.57 +0.5

Or see this region's nucleotide sequence