Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2148 and Rru_A2149 are separated by 707 nucleotides Rru_A2149 and Rru_A2150 are separated by 182 nucleotides
Rru_A2148: Rru_A2148 - N-acetylmuramoyl-L-alanine amidase (NCBI), at 2,493,887 to 2,495,455
_A2148
Rru_A2149: Rru_A2149 - Ribonuclease E and G (NCBI), at 2,496,163 to 2,498,832
_A2149
Rru_A2150: Rru_A2150 - hypothetical protein (NCBI), at 2,499,015 to 2,499,413
_A2150
Position (kb)
2496
2497
2498
2499 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2495.446 kb on - strand at 2495.446 kb on - strand at 2495.446 kb on - strand at 2495.446 kb on - strand at 2495.446 kb on - strand at 2495.479 kb on - strand at 2495.516 kb on - strand at 2495.535 kb on - strand at 2495.551 kb on - strand at 2496.037 kb on + strand at 2496.058 kb on + strand at 2498.946 kb on + strand at 2498.946 kb on + strand at 2498.946 kb on + strand at 2498.946 kb on + strand at 2498.947 kb on - strand at 2498.947 kb on - strand at 2498.947 kb on - strand at 2498.947 kb on - strand at 2498.947 kb on - strand at 2498.947 kb on - strand at 2498.947 kb on - strand at 2498.947 kb on - strand at 2498.947 kb on - strand at 2498.947 kb on - strand at 2499.553 kb on + strand at 2499.553 kb on + strand at 2499.553 kb on + strand at 2499.553 kb on + strand at 2499.554 kb on - strand at 2499.554 kb on - strand at 2499.564 kb on + strand at 2499.564 kb on + strand at 2499.565 kb on - strand at 2499.608 kb on + strand at 2499.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 2,495,446 - +1.7 2,495,446 - +0.8 2,495,446 - -0.7 2,495,446 - +0.7 2,495,446 - -1.3 2,495,479 - +0.1 2,495,516 - +1.5 2,495,535 - +1.7 2,495,551 - -2.1 2,496,037 + -2.7 2,496,058 + -1.6 2,498,946 + -3.1 2,498,946 + +0.5 2,498,946 + -0.7 2,498,946 + +0.5 2,498,947 - -2.2 2,498,947 - +0.5 2,498,947 - -0.6 2,498,947 - -0.8 2,498,947 - -0.3 2,498,947 - -0.9 2,498,947 - -1.9 2,498,947 - -1.5 2,498,947 - -0.9 2,498,947 - -0.0 2,499,553 + +0.0 2,499,553 + -2.1 2,499,553 + +0.6 2,499,553 + -0.3 2,499,554 - -2.5 2,499,554 - -0.2 2,499,564 + +0.0 2,499,564 + +0.0 2,499,565 - +0.2 2,499,608 + -0.3 2,499,830 - +0.6
Or see this region's nucleotide sequence