Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2071 and Rru_A2072 are separated by 77 nucleotides Rru_A2072 and Rru_A2073 are separated by 123 nucleotides
Rru_A2071: Rru_A2071 - Methylmalonate-semialdehyde dehydrogenase (NCBI), at 2,395,812 to 2,397,317
_A2071
Rru_A2072: Rru_A2072 - Aspartyl-tRNA synthetase (NCBI), at 2,397,395 to 2,399,215
_A2072
Rru_A2073: Rru_A2073 - Ribonuclease D (NCBI), at 2,399,339 to 2,400,499
_A2073
Position (kb)
2397
2398
2399
2400 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2396.514 kb on + strand, within Rru_A2071 at 2396.514 kb on + strand, within Rru_A2071 at 2396.514 kb on + strand, within Rru_A2071 at 2396.514 kb on + strand, within Rru_A2071 at 2396.514 kb on + strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.515 kb on - strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.520 kb on + strand, within Rru_A2071 at 2396.521 kb on - strand, within Rru_A2071 at 2396.640 kb on + strand, within Rru_A2071 at 2396.896 kb on - strand, within Rru_A2071 at 2396.896 kb on - strand, within Rru_A2071 at 2396.910 kb on + strand, within Rru_A2071 at 2396.911 kb on - strand, within Rru_A2071 at 2396.911 kb on - strand, within Rru_A2071 at 2396.958 kb on + strand, within Rru_A2071 at 2397.009 kb on + strand, within Rru_A2071 at 2397.009 kb on + strand, within Rru_A2071 at 2397.009 kb on + strand, within Rru_A2071 at 2397.045 kb on + strand, within Rru_A2071 at 2397.046 kb on - strand, within Rru_A2071 at 2397.159 kb on + strand, within Rru_A2071 at 2397.159 kb on + strand, within Rru_A2071 at 2397.234 kb on + strand at 2397.234 kb on + strand at 2397.234 kb on + strand at 2397.235 kb on - strand at 2397.235 kb on - strand at 2397.397 kb on - strand at 2399.327 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 2,396,514 + Rru_A2071 0.47 -0.1 2,396,514 + Rru_A2071 0.47 +0.9 2,396,514 + Rru_A2071 0.47 +1.1 2,396,514 + Rru_A2071 0.47 -0.1 2,396,514 + Rru_A2071 0.47 +0.7 2,396,515 - Rru_A2071 0.47 +0.5 2,396,515 - Rru_A2071 0.47 +1.3 2,396,515 - Rru_A2071 0.47 +0.8 2,396,515 - Rru_A2071 0.47 +0.0 2,396,515 - Rru_A2071 0.47 -0.4 2,396,515 - Rru_A2071 0.47 -0.7 2,396,515 - Rru_A2071 0.47 -0.3 2,396,515 - Rru_A2071 0.47 +1.5 2,396,515 - Rru_A2071 0.47 +1.2 2,396,520 + Rru_A2071 0.47 -0.2 2,396,520 + Rru_A2071 0.47 -0.4 2,396,520 + Rru_A2071 0.47 -0.7 2,396,520 + Rru_A2071 0.47 +0.4 2,396,520 + Rru_A2071 0.47 +0.1 2,396,520 + Rru_A2071 0.47 -0.2 2,396,521 - Rru_A2071 0.47 -0.8 2,396,640 + Rru_A2071 0.55 +0.7 2,396,896 - Rru_A2071 0.72 +1.0 2,396,896 - Rru_A2071 0.72 +0.4 2,396,910 + Rru_A2071 0.73 -0.0 2,396,911 - Rru_A2071 0.73 -0.1 2,396,911 - Rru_A2071 0.73 +1.9 2,396,958 + Rru_A2071 0.76 -0.6 2,397,009 + Rru_A2071 0.79 -2.4 2,397,009 + Rru_A2071 0.79 +0.9 2,397,009 + Rru_A2071 0.79 +0.5 2,397,045 + Rru_A2071 0.82 -0.2 2,397,046 - Rru_A2071 0.82 -0.7 2,397,159 + Rru_A2071 0.89 +0.7 2,397,159 + Rru_A2071 0.89 -0.2 2,397,234 + -0.6 2,397,234 + -0.7 2,397,234 + +0.6 2,397,235 - -1.3 2,397,235 - +0.8 2,397,397 - -0.6 2,399,327 + -0.8
Or see this region's nucleotide sequence