Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1619

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1617 and Rru_A1618 are separated by 65 nucleotidesRru_A1618 and Rru_A1619 are separated by 88 nucleotidesRru_A1619 and Rru_A1620 are separated by 209 nucleotidesRru_A1620 and Rru_A1621 are separated by 24 nucleotides Rru_A1617: Rru_A1617 - Protein of unknown function DUF1289 (NCBI), at 1,910,734 to 1,911,645 _A1617 Rru_A1618: Rru_A1618 - hypothetical protein (NCBI), at 1,911,711 to 1,911,965 _A1618 Rru_A1619: Rru_A1619 - hypothetical protein (NCBI), at 1,912,054 to 1,912,578 _A1619 Rru_A1620: Rru_A1620 - hypothetical protein (NCBI), at 1,912,788 to 1,913,303 _A1620 Rru_A1621: Rru_A1621 - Dihydrouridine synthase TIM-barrel protein yjbN (NCBI), at 1,913,328 to 1,914,377 _A1621 Position (kb) 1912 1913Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1911.193 kb on + strand, within Rru_A1617at 1911.193 kb on + strand, within Rru_A1617at 1911.193 kb on + strand, within Rru_A1617at 1911.194 kb on - strand, within Rru_A1617at 1911.522 kb on + strand, within Rru_A1617at 1911.787 kb on + strand, within Rru_A1618at 1911.788 kb on - strand, within Rru_A1618at 1911.881 kb on - strand, within Rru_A1618at 1911.985 kb on - strandat 1912.159 kb on - strand, within Rru_A1619at 1912.203 kb on + strand, within Rru_A1619at 1912.204 kb on - strand, within Rru_A1619at 1912.226 kb on + strand, within Rru_A1619at 1912.226 kb on + strand, within Rru_A1619at 1912.226 kb on + strand, within Rru_A1619at 1912.270 kb on + strand, within Rru_A1619at 1912.270 kb on + strand, within Rru_A1619at 1912.271 kb on - strand, within Rru_A1619at 1912.271 kb on - strand, within Rru_A1619at 1912.271 kb on - strand, within Rru_A1619at 1912.324 kb on + strand, within Rru_A1619at 1912.324 kb on + strand, within Rru_A1619at 1912.325 kb on - strand, within Rru_A1619at 1912.648 kb on + strandat 1912.724 kb on + strandat 1912.724 kb on + strandat 1912.748 kb on - strandat 1913.006 kb on + strand, within Rru_A1620at 1913.112 kb on + strand, within Rru_A1620at 1913.127 kb on + strand, within Rru_A1620at 1913.301 kb on + strandat 1913.431 kb on + strandat 1913.471 kb on + strand, within Rru_A1621at 1913.520 kb on + strand, within Rru_A1621at 1913.520 kb on + strand, within Rru_A1621at 1913.520 kb on + strand, within Rru_A1621at 1913.520 kb on + strand, within Rru_A1621at 1913.520 kb on + strand, within Rru_A1621at 1913.520 kb on + strand, within Rru_A1621at 1913.520 kb on + strand, within Rru_A1621at 1913.521 kb on - strand, within Rru_A1621at 1913.525 kb on - strand, within Rru_A1621

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,911,193 + Rru_A1617 0.50 +0.0
1,911,193 + Rru_A1617 0.50 +1.1
1,911,193 + Rru_A1617 0.50 +0.8
1,911,194 - Rru_A1617 0.50 -1.0
1,911,522 + Rru_A1617 0.86 -1.2
1,911,787 + Rru_A1618 0.30 -0.2
1,911,788 - Rru_A1618 0.30 +0.7
1,911,881 - Rru_A1618 0.67 -1.2
1,911,985 - +0.9
1,912,159 - Rru_A1619 0.20 -0.8
1,912,203 + Rru_A1619 0.28 -0.4
1,912,204 - Rru_A1619 0.29 +0.9
1,912,226 + Rru_A1619 0.33 -0.8
1,912,226 + Rru_A1619 0.33 +0.0
1,912,226 + Rru_A1619 0.33 -0.4
1,912,270 + Rru_A1619 0.41 -1.4
1,912,270 + Rru_A1619 0.41 +0.5
1,912,271 - Rru_A1619 0.41 -0.7
1,912,271 - Rru_A1619 0.41 +2.2
1,912,271 - Rru_A1619 0.41 +0.1
1,912,324 + Rru_A1619 0.51 -2.7
1,912,324 + Rru_A1619 0.51 +0.1
1,912,325 - Rru_A1619 0.52 +1.0
1,912,648 + -0.8
1,912,724 + -0.3
1,912,724 + -0.2
1,912,748 - +0.5
1,913,006 + Rru_A1620 0.42 +1.5
1,913,112 + Rru_A1620 0.63 -2.6
1,913,127 + Rru_A1620 0.66 +0.2
1,913,301 + +0.2
1,913,431 + +0.2
1,913,471 + Rru_A1621 0.14 -0.4
1,913,520 + Rru_A1621 0.18 -0.4
1,913,520 + Rru_A1621 0.18 -3.2
1,913,520 + Rru_A1621 0.18 +0.7
1,913,520 + Rru_A1621 0.18 -0.2
1,913,520 + Rru_A1621 0.18 +0.1
1,913,520 + Rru_A1621 0.18 -0.8
1,913,520 + Rru_A1621 0.18 +0.6
1,913,521 - Rru_A1621 0.18 +0.9
1,913,525 - Rru_A1621 0.19 -0.0

Or see this region's nucleotide sequence