Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1608

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1607 and Rru_A1608 are separated by 8 nucleotidesRru_A1608 and Rru_A1609 are separated by 86 nucleotidesRru_A1609 and Rru_A1610 are separated by 86 nucleotides Rru_A1607: Rru_A1607 - 4-alpha-glucanotransferase (NCBI), at 1,898,895 to 1,901,081 _A1607 Rru_A1608: Rru_A1608 - MscS Mechanosensitive ion channel (NCBI), at 1,901,090 to 1,903,696 _A1608 Rru_A1609: Rru_A1609 - hypothetical protein (NCBI), at 1,903,783 to 1,904,085 _A1609 Rru_A1610: Rru_A1610 - hypothetical protein (NCBI), at 1,904,172 to 1,904,954 _A1610 Position (kb) 1901 1902 1903 1904Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1900.122 kb on + strand, within Rru_A1607at 1900.122 kb on + strand, within Rru_A1607at 1900.291 kb on - strand, within Rru_A1607at 1900.416 kb on + strand, within Rru_A1607at 1900.416 kb on + strand, within Rru_A1607at 1900.416 kb on + strand, within Rru_A1607at 1900.417 kb on - strand, within Rru_A1607at 1900.558 kb on - strand, within Rru_A1607at 1900.615 kb on - strand, within Rru_A1607at 1900.889 kb on + strandat 1900.890 kb on - strandat 1900.890 kb on - strandat 1900.940 kb on + strandat 1901.039 kb on + strandat 1901.039 kb on + strandat 1901.039 kb on + strandat 1901.039 kb on + strandat 1901.039 kb on + strandat 1901.039 kb on + strandat 1901.040 kb on - strandat 1901.040 kb on - strandat 1901.040 kb on - strandat 1901.040 kb on - strandat 1901.040 kb on - strandat 1901.079 kb on + strandat 1901.080 kb on - strandat 1901.080 kb on - strandat 1901.080 kb on - strandat 1901.464 kb on + strand, within Rru_A1608at 1901.464 kb on + strand, within Rru_A1608at 1901.464 kb on + strand, within Rru_A1608at 1901.465 kb on - strand, within Rru_A1608at 1901.465 kb on - strand, within Rru_A1608at 1901.465 kb on - strand, within Rru_A1608at 1901.486 kb on + strand, within Rru_A1608at 1901.486 kb on + strand, within Rru_A1608at 1901.486 kb on + strand, within Rru_A1608at 1901.486 kb on + strand, within Rru_A1608at 1901.487 kb on - strand, within Rru_A1608at 1901.489 kb on - strand, within Rru_A1608at 1902.464 kb on + strand, within Rru_A1608at 1902.605 kb on + strand, within Rru_A1608at 1902.606 kb on - strand, within Rru_A1608at 1902.606 kb on - strand, within Rru_A1608at 1902.926 kb on + strand, within Rru_A1608at 1902.928 kb on + strand, within Rru_A1608at 1902.929 kb on - strand, within Rru_A1608at 1903.178 kb on - strand, within Rru_A1608at 1903.285 kb on + strand, within Rru_A1608at 1903.285 kb on + strand, within Rru_A1608at 1903.285 kb on + strand, within Rru_A1608at 1903.285 kb on + strand, within Rru_A1608at 1903.285 kb on + strand, within Rru_A1608at 1903.286 kb on - strand, within Rru_A1608at 1903.286 kb on - strand, within Rru_A1608at 1903.424 kb on + strand, within Rru_A1608at 1903.424 kb on + strand, within Rru_A1608at 1903.424 kb on + strand, within Rru_A1608at 1903.424 kb on + strand, within Rru_A1608at 1903.425 kb on - strand, within Rru_A1608at 1903.425 kb on - strand, within Rru_A1608at 1903.425 kb on - strand, within Rru_A1608at 1903.426 kb on + strand, within Rru_A1608at 1903.427 kb on - strand, within Rru_A1608at 1903.717 kb on - strandat 1903.768 kb on + strandat 1903.768 kb on + strandat 1903.769 kb on - strandat 1903.798 kb on + strandat 1903.799 kb on - strandat 1903.799 kb on - strandat 1904.083 kb on + strandat 1904.083 kb on + strandat 1904.083 kb on + strandat 1904.376 kb on - strand, within Rru_A1610

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,900,122 + Rru_A1607 0.56 -1.9
1,900,122 + Rru_A1607 0.56 -2.0
1,900,291 - Rru_A1607 0.64 -1.8
1,900,416 + Rru_A1607 0.70 -1.6
1,900,416 + Rru_A1607 0.70 -1.3
1,900,416 + Rru_A1607 0.70 -1.2
1,900,417 - Rru_A1607 0.70 -0.6
1,900,558 - Rru_A1607 0.76 -2.5
1,900,615 - Rru_A1607 0.79 -2.0
1,900,889 + -0.1
1,900,890 - -2.8
1,900,890 - -1.7
1,900,940 + -1.9
1,901,039 + -1.7
1,901,039 + -2.0
1,901,039 + -1.5
1,901,039 + -1.9
1,901,039 + -0.8
1,901,039 + -1.2
1,901,040 - -1.5
1,901,040 - -3.6
1,901,040 - -3.4
1,901,040 - -4.5
1,901,040 - -3.4
1,901,079 + -1.7
1,901,080 - -4.7
1,901,080 - -3.2
1,901,080 - -2.1
1,901,464 + Rru_A1608 0.14 +0.3
1,901,464 + Rru_A1608 0.14 -4.1
1,901,464 + Rru_A1608 0.14 +1.9
1,901,465 - Rru_A1608 0.14 -1.7
1,901,465 - Rru_A1608 0.14 +0.4
1,901,465 - Rru_A1608 0.14 -0.1
1,901,486 + Rru_A1608 0.15 -3.4
1,901,486 + Rru_A1608 0.15 -3.5
1,901,486 + Rru_A1608 0.15 -0.4
1,901,486 + Rru_A1608 0.15 -1.7
1,901,487 - Rru_A1608 0.15 -2.7
1,901,489 - Rru_A1608 0.15 -2.1
1,902,464 + Rru_A1608 0.53 -1.9
1,902,605 + Rru_A1608 0.58 -0.5
1,902,606 - Rru_A1608 0.58 -1.5
1,902,606 - Rru_A1608 0.58 +0.5
1,902,926 + Rru_A1608 0.70 -1.2
1,902,928 + Rru_A1608 0.71 -0.6
1,902,929 - Rru_A1608 0.71 -1.0
1,903,178 - Rru_A1608 0.80 -2.9
1,903,285 + Rru_A1608 0.84 +0.1
1,903,285 + Rru_A1608 0.84 -1.8
1,903,285 + Rru_A1608 0.84 -2.4
1,903,285 + Rru_A1608 0.84 -2.0
1,903,285 + Rru_A1608 0.84 -4.5
1,903,286 - Rru_A1608 0.84 -0.8
1,903,286 - Rru_A1608 0.84 -0.1
1,903,424 + Rru_A1608 0.90 -1.8
1,903,424 + Rru_A1608 0.90 -2.9
1,903,424 + Rru_A1608 0.90 -1.9
1,903,424 + Rru_A1608 0.90 -1.5
1,903,425 - Rru_A1608 0.90 -1.0
1,903,425 - Rru_A1608 0.90 +2.0
1,903,425 - Rru_A1608 0.90 -3.0
1,903,426 + Rru_A1608 0.90 -1.6
1,903,427 - Rru_A1608 0.90 -1.8
1,903,717 - -2.6
1,903,768 + +0.4
1,903,768 + +0.6
1,903,769 - -1.1
1,903,798 + +0.7
1,903,799 - +1.3
1,903,799 - -3.0
1,904,083 + +0.1
1,904,083 + +0.1
1,904,083 + -2.0
1,904,376 - Rru_A1610 0.26 -0.5

Or see this region's nucleotide sequence