Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1551 and Rru_A1552 are separated by 405 nucleotides Rru_A1552 and Rru_A1553 are separated by 370 nucleotides Rru_A1553 and Rru_AR0029 are separated by 284 nucleotides
Rru_A1551: Rru_A1551 - ClpX, ATPase regulatory subunit (NCBI), at 1,828,668 to 1,829,936
_A1551
Rru_A1552: Rru_A1552 - Peptidase S16, ATP-dependent protease La (NCBI), at 1,830,342 to 1,832,762
_A1552
Rru_A1553: Rru_A1553 - Histone-like DNA-binding protein (NCBI), at 1,833,133 to 1,833,408
_A1553
Rru_AR0029: Rru_AR0029 - tRNA-Val (NCBI), at 1,833,693 to 1,833,768
_AR0029
Position (kb)
1830
1831
1832
1833 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1829.896 kb on - strand at 1829.937 kb on + strand at 1829.937 kb on + strand at 1829.938 kb on - strand at 1829.938 kb on - strand at 1829.938 kb on - strand at 1829.938 kb on - strand at 1830.084 kb on - strand at 1830.540 kb on + strand at 1830.756 kb on + strand, within Rru_A1552 at 1830.757 kb on - strand, within Rru_A1552 at 1830.837 kb on - strand, within Rru_A1552 at 1831.215 kb on + strand, within Rru_A1552 at 1831.319 kb on + strand, within Rru_A1552 at 1831.528 kb on - strand, within Rru_A1552 at 1831.717 kb on - strand, within Rru_A1552 at 1831.938 kb on + strand, within Rru_A1552 at 1832.657 kb on + strand at 1832.657 kb on + strand at 1832.658 kb on - strand at 1832.658 kb on - strand at 1832.760 kb on + strand at 1832.811 kb on + strand at 1833.107 kb on + strand at 1833.107 kb on + strand at 1833.496 kb on - strand at 1833.551 kb on + strand at 1833.551 kb on + strand at 1833.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 1,829,896 - -2.2 1,829,937 + -1.1 1,829,937 + -3.0 1,829,938 - -2.1 1,829,938 - -1.0 1,829,938 - +0.6 1,829,938 - +1.1 1,830,084 - -0.2 1,830,540 + -0.4 1,830,756 + Rru_A1552 0.17 -0.1 1,830,757 - Rru_A1552 0.17 -1.1 1,830,837 - Rru_A1552 0.20 -2.3 1,831,215 + Rru_A1552 0.36 -0.7 1,831,319 + Rru_A1552 0.40 -1.0 1,831,528 - Rru_A1552 0.49 -1.7 1,831,717 - Rru_A1552 0.57 -1.8 1,831,938 + Rru_A1552 0.66 -2.7 1,832,657 + +0.3 1,832,657 + -0.1 1,832,658 - +1.6 1,832,658 - +0.8 1,832,760 + -1.5 1,832,811 + -0.2 1,833,107 + -1.3 1,833,107 + -0.5 1,833,496 - -0.4 1,833,551 + -2.5 1,833,551 + +0.9 1,833,552 - -2.4
Or see this region's nucleotide sequence