Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1475 and Rru_A1476 are separated by 370 nucleotides Rru_A1476 and Rru_A1477 are separated by 233 nucleotides Rru_A1477 and Rru_A1478 overlap by 4 nucleotides
Rru_A1475: Rru_A1475 - Citrate transporter (NCBI), at 1,740,717 to 1,742,018
_A1475
Rru_A1476: Rru_A1476 - PhnA protein (NCBI), at 1,742,389 to 1,742,739
_A1476
Rru_A1477: Rru_A1477 - hypothetical protein (NCBI), at 1,742,973 to 1,743,713
_A1477
Rru_A1478: Rru_A1478 - HPr kinase (NCBI), at 1,743,710 to 1,744,702
_A1478
Position (kb)
1742
1743 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1741.444 kb on + strand, within Rru_A1475 at 1741.445 kb on - strand, within Rru_A1475 at 1741.445 kb on - strand, within Rru_A1475 at 1742.280 kb on + strand at 1742.357 kb on - strand at 1742.434 kb on + strand, within Rru_A1476 at 1742.435 kb on - strand, within Rru_A1476 at 1742.670 kb on + strand, within Rru_A1476 at 1742.670 kb on + strand, within Rru_A1476 at 1742.670 kb on + strand, within Rru_A1476 at 1742.670 kb on + strand, within Rru_A1476 at 1742.670 kb on + strand, within Rru_A1476 at 1742.670 kb on + strand, within Rru_A1476 at 1742.671 kb on - strand, within Rru_A1476 at 1742.671 kb on - strand, within Rru_A1476 at 1742.671 kb on - strand, within Rru_A1476 at 1742.671 kb on - strand, within Rru_A1476 at 1742.829 kb on - strand at 1742.943 kb on + strand at 1742.943 kb on + strand at 1743.423 kb on + strand, within Rru_A1477 at 1743.424 kb on - strand, within Rru_A1477 at 1743.424 kb on - strand, within Rru_A1477 at 1743.424 kb on - strand, within Rru_A1477 at 1743.424 kb on - strand, within Rru_A1477 at 1743.424 kb on - strand, within Rru_A1477 at 1743.507 kb on - strand, within Rru_A1477 at 1743.510 kb on + strand, within Rru_A1477 at 1743.510 kb on + strand, within Rru_A1477 at 1743.510 kb on + strand, within Rru_A1477 at 1743.510 kb on + strand, within Rru_A1477 at 1743.510 kb on + strand, within Rru_A1477 at 1743.510 kb on + strand, within Rru_A1477 at 1743.511 kb on - strand, within Rru_A1477 at 1743.511 kb on - strand, within Rru_A1477
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 1,741,444 + Rru_A1475 0.56 +0.7 1,741,445 - Rru_A1475 0.56 -1.6 1,741,445 - Rru_A1475 0.56 +0.3 1,742,280 + -0.9 1,742,357 - -3.6 1,742,434 + Rru_A1476 0.13 -1.5 1,742,435 - Rru_A1476 0.13 -1.4 1,742,670 + Rru_A1476 0.80 +0.1 1,742,670 + Rru_A1476 0.80 -0.7 1,742,670 + Rru_A1476 0.80 -0.2 1,742,670 + Rru_A1476 0.80 +0.3 1,742,670 + Rru_A1476 0.80 -1.1 1,742,670 + Rru_A1476 0.80 +1.9 1,742,671 - Rru_A1476 0.80 +0.1 1,742,671 - Rru_A1476 0.80 -1.3 1,742,671 - Rru_A1476 0.80 -2.2 1,742,671 - Rru_A1476 0.80 -0.2 1,742,829 - -1.1 1,742,943 + -0.2 1,742,943 + +0.0 1,743,423 + Rru_A1477 0.61 -0.7 1,743,424 - Rru_A1477 0.61 +0.6 1,743,424 - Rru_A1477 0.61 -1.1 1,743,424 - Rru_A1477 0.61 -0.6 1,743,424 - Rru_A1477 0.61 +0.1 1,743,424 - Rru_A1477 0.61 -0.1 1,743,507 - Rru_A1477 0.72 -0.1 1,743,510 + Rru_A1477 0.72 +0.7 1,743,510 + Rru_A1477 0.72 -0.4 1,743,510 + Rru_A1477 0.72 -0.1 1,743,510 + Rru_A1477 0.72 +1.4 1,743,510 + Rru_A1477 0.72 +1.4 1,743,510 + Rru_A1477 0.72 -1.8 1,743,511 - Rru_A1477 0.73 -0.0 1,743,511 - Rru_A1477 0.73 -0.2
Or see this region's nucleotide sequence