Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1476

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1475 and Rru_A1476 are separated by 370 nucleotidesRru_A1476 and Rru_A1477 are separated by 233 nucleotidesRru_A1477 and Rru_A1478 overlap by 4 nucleotides Rru_A1475: Rru_A1475 - Citrate transporter (NCBI), at 1,740,717 to 1,742,018 _A1475 Rru_A1476: Rru_A1476 - PhnA protein (NCBI), at 1,742,389 to 1,742,739 _A1476 Rru_A1477: Rru_A1477 - hypothetical protein (NCBI), at 1,742,973 to 1,743,713 _A1477 Rru_A1478: Rru_A1478 - HPr kinase (NCBI), at 1,743,710 to 1,744,702 _A1478 Position (kb) 1742 1743Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1741.444 kb on + strand, within Rru_A1475at 1741.445 kb on - strand, within Rru_A1475at 1741.445 kb on - strand, within Rru_A1475at 1742.280 kb on + strandat 1742.357 kb on - strandat 1742.434 kb on + strand, within Rru_A1476at 1742.435 kb on - strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.670 kb on + strand, within Rru_A1476at 1742.671 kb on - strand, within Rru_A1476at 1742.671 kb on - strand, within Rru_A1476at 1742.671 kb on - strand, within Rru_A1476at 1742.671 kb on - strand, within Rru_A1476at 1742.829 kb on - strandat 1742.943 kb on + strandat 1742.943 kb on + strandat 1743.423 kb on + strand, within Rru_A1477at 1743.424 kb on - strand, within Rru_A1477at 1743.424 kb on - strand, within Rru_A1477at 1743.424 kb on - strand, within Rru_A1477at 1743.424 kb on - strand, within Rru_A1477at 1743.424 kb on - strand, within Rru_A1477at 1743.507 kb on - strand, within Rru_A1477at 1743.510 kb on + strand, within Rru_A1477at 1743.510 kb on + strand, within Rru_A1477at 1743.510 kb on + strand, within Rru_A1477at 1743.510 kb on + strand, within Rru_A1477at 1743.510 kb on + strand, within Rru_A1477at 1743.510 kb on + strand, within Rru_A1477at 1743.511 kb on - strand, within Rru_A1477at 1743.511 kb on - strand, within Rru_A1477

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,741,444 + Rru_A1475 0.56 +0.7
1,741,445 - Rru_A1475 0.56 -1.6
1,741,445 - Rru_A1475 0.56 +0.3
1,742,280 + -0.9
1,742,357 - -3.6
1,742,434 + Rru_A1476 0.13 -1.5
1,742,435 - Rru_A1476 0.13 -1.4
1,742,670 + Rru_A1476 0.80 +0.1
1,742,670 + Rru_A1476 0.80 -0.7
1,742,670 + Rru_A1476 0.80 -0.2
1,742,670 + Rru_A1476 0.80 +0.3
1,742,670 + Rru_A1476 0.80 -1.1
1,742,670 + Rru_A1476 0.80 +1.9
1,742,671 - Rru_A1476 0.80 +0.1
1,742,671 - Rru_A1476 0.80 -1.3
1,742,671 - Rru_A1476 0.80 -2.2
1,742,671 - Rru_A1476 0.80 -0.2
1,742,829 - -1.1
1,742,943 + -0.2
1,742,943 + +0.0
1,743,423 + Rru_A1477 0.61 -0.7
1,743,424 - Rru_A1477 0.61 +0.6
1,743,424 - Rru_A1477 0.61 -1.1
1,743,424 - Rru_A1477 0.61 -0.6
1,743,424 - Rru_A1477 0.61 +0.1
1,743,424 - Rru_A1477 0.61 -0.1
1,743,507 - Rru_A1477 0.72 -0.1
1,743,510 + Rru_A1477 0.72 +0.7
1,743,510 + Rru_A1477 0.72 -0.4
1,743,510 + Rru_A1477 0.72 -0.1
1,743,510 + Rru_A1477 0.72 +1.4
1,743,510 + Rru_A1477 0.72 +1.4
1,743,510 + Rru_A1477 0.72 -1.8
1,743,511 - Rru_A1477 0.73 -0.0
1,743,511 - Rru_A1477 0.73 -0.2

Or see this region's nucleotide sequence