Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1467 and Rru_A1468 are separated by 12 nucleotides Rru_A1468 and Rru_A1469 are separated by 111 nucleotides
Rru_A1467: Rru_A1467 - Acetate kinase (NCBI), at 1,733,281 to 1,734,489
_A1467
Rru_A1468: Rru_A1468 - Phosphate butyryltransferase (NCBI), at 1,734,502 to 1,735,938
_A1468
Rru_A1469: Rru_A1469 - Acetyl-CoA C-acetyltransferase (NCBI), at 1,736,050 to 1,737,225
_A1469
Position (kb)
1734
1735
1736 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1733.666 kb on + strand, within Rru_A1467 at 1733.701 kb on + strand, within Rru_A1467 at 1733.701 kb on + strand, within Rru_A1467 at 1733.702 kb on - strand, within Rru_A1467 at 1733.702 kb on - strand, within Rru_A1467 at 1733.717 kb on + strand, within Rru_A1467 at 1733.717 kb on + strand, within Rru_A1467 at 1733.717 kb on + strand, within Rru_A1467 at 1733.717 kb on + strand, within Rru_A1467 at 1733.718 kb on - strand, within Rru_A1467 at 1733.718 kb on - strand, within Rru_A1467 at 1733.718 kb on - strand, within Rru_A1467 at 1733.718 kb on - strand, within Rru_A1467 at 1733.718 kb on - strand, within Rru_A1467 at 1733.796 kb on + strand, within Rru_A1467 at 1733.797 kb on - strand, within Rru_A1467 at 1733.912 kb on + strand, within Rru_A1467 at 1733.912 kb on + strand, within Rru_A1467 at 1733.912 kb on + strand, within Rru_A1467 at 1733.912 kb on + strand, within Rru_A1467 at 1733.912 kb on + strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.913 kb on - strand, within Rru_A1467 at 1733.918 kb on + strand, within Rru_A1467 at 1733.918 kb on + strand, within Rru_A1467 at 1733.919 kb on - strand, within Rru_A1467 at 1733.919 kb on - strand, within Rru_A1467 at 1733.919 kb on - strand, within Rru_A1467 at 1733.919 kb on - strand, within Rru_A1467 at 1733.919 kb on - strand, within Rru_A1467 at 1733.940 kb on - strand, within Rru_A1467 at 1733.981 kb on + strand, within Rru_A1467 at 1733.981 kb on + strand, within Rru_A1467 at 1733.982 kb on - strand, within Rru_A1467 at 1733.982 kb on - strand, within Rru_A1467 at 1735.135 kb on - strand, within Rru_A1468 at 1735.597 kb on + strand, within Rru_A1468 at 1735.598 kb on - strand, within Rru_A1468 at 1735.615 kb on - strand, within Rru_A1468 at 1735.661 kb on + strand, within Rru_A1468 at 1735.662 kb on - strand, within Rru_A1468 at 1735.662 kb on - strand, within Rru_A1468 at 1735.662 kb on - strand, within Rru_A1468 at 1736.051 kb on + strand at 1736.051 kb on + strand at 1736.052 kb on - strand at 1736.052 kb on - strand at 1736.402 kb on - strand, within Rru_A1469
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 1,733,666 + Rru_A1467 0.32 +0.3 1,733,701 + Rru_A1467 0.35 -0.0 1,733,701 + Rru_A1467 0.35 -0.6 1,733,702 - Rru_A1467 0.35 +0.1 1,733,702 - Rru_A1467 0.35 -0.6 1,733,717 + Rru_A1467 0.36 +1.6 1,733,717 + Rru_A1467 0.36 +3.4 1,733,717 + Rru_A1467 0.36 +0.7 1,733,717 + Rru_A1467 0.36 -0.2 1,733,718 - Rru_A1467 0.36 +0.6 1,733,718 - Rru_A1467 0.36 +0.2 1,733,718 - Rru_A1467 0.36 +0.4 1,733,718 - Rru_A1467 0.36 +0.1 1,733,718 - Rru_A1467 0.36 -0.8 1,733,796 + Rru_A1467 0.43 +1.7 1,733,797 - Rru_A1467 0.43 +0.4 1,733,912 + Rru_A1467 0.52 -0.3 1,733,912 + Rru_A1467 0.52 +0.3 1,733,912 + Rru_A1467 0.52 -0.6 1,733,912 + Rru_A1467 0.52 -0.2 1,733,912 + Rru_A1467 0.52 +0.9 1,733,913 - Rru_A1467 0.52 +0.8 1,733,913 - Rru_A1467 0.52 -0.4 1,733,913 - Rru_A1467 0.52 -0.1 1,733,913 - Rru_A1467 0.52 +1.7 1,733,913 - Rru_A1467 0.52 +0.1 1,733,913 - Rru_A1467 0.52 +2.4 1,733,913 - Rru_A1467 0.52 +1.9 1,733,913 - Rru_A1467 0.52 -0.0 1,733,913 - Rru_A1467 0.52 -0.0 1,733,913 - Rru_A1467 0.52 -3.0 1,733,913 - Rru_A1467 0.52 +2.4 1,733,913 - Rru_A1467 0.52 -0.2 1,733,913 - Rru_A1467 0.52 +0.5 1,733,918 + Rru_A1467 0.53 -3.3 1,733,918 + Rru_A1467 0.53 -0.5 1,733,919 - Rru_A1467 0.53 -0.3 1,733,919 - Rru_A1467 0.53 +0.1 1,733,919 - Rru_A1467 0.53 -0.2 1,733,919 - Rru_A1467 0.53 +0.4 1,733,919 - Rru_A1467 0.53 +1.7 1,733,940 - Rru_A1467 0.55 -0.4 1,733,981 + Rru_A1467 0.58 -0.8 1,733,981 + Rru_A1467 0.58 +0.7 1,733,982 - Rru_A1467 0.58 -1.1 1,733,982 - Rru_A1467 0.58 -0.7 1,735,135 - Rru_A1468 0.44 +1.1 1,735,597 + Rru_A1468 0.76 -0.2 1,735,598 - Rru_A1468 0.76 +1.1 1,735,615 - Rru_A1468 0.77 -0.1 1,735,661 + Rru_A1468 0.81 -1.0 1,735,662 - Rru_A1468 0.81 -2.3 1,735,662 - Rru_A1468 0.81 -0.5 1,735,662 - Rru_A1468 0.81 +2.2 1,736,051 + -2.4 1,736,051 + -0.3 1,736,052 - -1.6 1,736,052 - -1.8 1,736,402 - Rru_A1469 0.30 +1.0
Or see this region's nucleotide sequence