Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1468

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1467 and Rru_A1468 are separated by 12 nucleotidesRru_A1468 and Rru_A1469 are separated by 111 nucleotides Rru_A1467: Rru_A1467 - Acetate kinase (NCBI), at 1,733,281 to 1,734,489 _A1467 Rru_A1468: Rru_A1468 - Phosphate butyryltransferase (NCBI), at 1,734,502 to 1,735,938 _A1468 Rru_A1469: Rru_A1469 - Acetyl-CoA C-acetyltransferase (NCBI), at 1,736,050 to 1,737,225 _A1469 Position (kb) 1734 1735 1736Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1733.666 kb on + strand, within Rru_A1467at 1733.701 kb on + strand, within Rru_A1467at 1733.701 kb on + strand, within Rru_A1467at 1733.702 kb on - strand, within Rru_A1467at 1733.702 kb on - strand, within Rru_A1467at 1733.717 kb on + strand, within Rru_A1467at 1733.717 kb on + strand, within Rru_A1467at 1733.717 kb on + strand, within Rru_A1467at 1733.717 kb on + strand, within Rru_A1467at 1733.718 kb on - strand, within Rru_A1467at 1733.718 kb on - strand, within Rru_A1467at 1733.718 kb on - strand, within Rru_A1467at 1733.718 kb on - strand, within Rru_A1467at 1733.718 kb on - strand, within Rru_A1467at 1733.796 kb on + strand, within Rru_A1467at 1733.797 kb on - strand, within Rru_A1467at 1733.912 kb on + strand, within Rru_A1467at 1733.912 kb on + strand, within Rru_A1467at 1733.912 kb on + strand, within Rru_A1467at 1733.912 kb on + strand, within Rru_A1467at 1733.912 kb on + strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.913 kb on - strand, within Rru_A1467at 1733.918 kb on + strand, within Rru_A1467at 1733.918 kb on + strand, within Rru_A1467at 1733.919 kb on - strand, within Rru_A1467at 1733.919 kb on - strand, within Rru_A1467at 1733.919 kb on - strand, within Rru_A1467at 1733.919 kb on - strand, within Rru_A1467at 1733.919 kb on - strand, within Rru_A1467at 1733.940 kb on - strand, within Rru_A1467at 1733.981 kb on + strand, within Rru_A1467at 1733.981 kb on + strand, within Rru_A1467at 1733.982 kb on - strand, within Rru_A1467at 1733.982 kb on - strand, within Rru_A1467at 1735.135 kb on - strand, within Rru_A1468at 1735.597 kb on + strand, within Rru_A1468at 1735.598 kb on - strand, within Rru_A1468at 1735.615 kb on - strand, within Rru_A1468at 1735.661 kb on + strand, within Rru_A1468at 1735.662 kb on - strand, within Rru_A1468at 1735.662 kb on - strand, within Rru_A1468at 1735.662 kb on - strand, within Rru_A1468at 1736.051 kb on + strandat 1736.051 kb on + strandat 1736.052 kb on - strandat 1736.052 kb on - strandat 1736.402 kb on - strand, within Rru_A1469

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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1,733,666 + Rru_A1467 0.32 +0.3
1,733,701 + Rru_A1467 0.35 -0.0
1,733,701 + Rru_A1467 0.35 -0.6
1,733,702 - Rru_A1467 0.35 +0.1
1,733,702 - Rru_A1467 0.35 -0.6
1,733,717 + Rru_A1467 0.36 +1.6
1,733,717 + Rru_A1467 0.36 +3.4
1,733,717 + Rru_A1467 0.36 +0.7
1,733,717 + Rru_A1467 0.36 -0.2
1,733,718 - Rru_A1467 0.36 +0.6
1,733,718 - Rru_A1467 0.36 +0.2
1,733,718 - Rru_A1467 0.36 +0.4
1,733,718 - Rru_A1467 0.36 +0.1
1,733,718 - Rru_A1467 0.36 -0.8
1,733,796 + Rru_A1467 0.43 +1.7
1,733,797 - Rru_A1467 0.43 +0.4
1,733,912 + Rru_A1467 0.52 -0.3
1,733,912 + Rru_A1467 0.52 +0.3
1,733,912 + Rru_A1467 0.52 -0.6
1,733,912 + Rru_A1467 0.52 -0.2
1,733,912 + Rru_A1467 0.52 +0.9
1,733,913 - Rru_A1467 0.52 +0.8
1,733,913 - Rru_A1467 0.52 -0.4
1,733,913 - Rru_A1467 0.52 -0.1
1,733,913 - Rru_A1467 0.52 +1.7
1,733,913 - Rru_A1467 0.52 +0.1
1,733,913 - Rru_A1467 0.52 +2.4
1,733,913 - Rru_A1467 0.52 +1.9
1,733,913 - Rru_A1467 0.52 -0.0
1,733,913 - Rru_A1467 0.52 -0.0
1,733,913 - Rru_A1467 0.52 -3.0
1,733,913 - Rru_A1467 0.52 +2.4
1,733,913 - Rru_A1467 0.52 -0.2
1,733,913 - Rru_A1467 0.52 +0.5
1,733,918 + Rru_A1467 0.53 -3.3
1,733,918 + Rru_A1467 0.53 -0.5
1,733,919 - Rru_A1467 0.53 -0.3
1,733,919 - Rru_A1467 0.53 +0.1
1,733,919 - Rru_A1467 0.53 -0.2
1,733,919 - Rru_A1467 0.53 +0.4
1,733,919 - Rru_A1467 0.53 +1.7
1,733,940 - Rru_A1467 0.55 -0.4
1,733,981 + Rru_A1467 0.58 -0.8
1,733,981 + Rru_A1467 0.58 +0.7
1,733,982 - Rru_A1467 0.58 -1.1
1,733,982 - Rru_A1467 0.58 -0.7
1,735,135 - Rru_A1468 0.44 +1.1
1,735,597 + Rru_A1468 0.76 -0.2
1,735,598 - Rru_A1468 0.76 +1.1
1,735,615 - Rru_A1468 0.77 -0.1
1,735,661 + Rru_A1468 0.81 -1.0
1,735,662 - Rru_A1468 0.81 -2.3
1,735,662 - Rru_A1468 0.81 -0.5
1,735,662 - Rru_A1468 0.81 +2.2
1,736,051 + -2.4
1,736,051 + -0.3
1,736,052 - -1.6
1,736,052 - -1.8
1,736,402 - Rru_A1469 0.30 +1.0

Or see this region's nucleotide sequence