Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1220 and Rru_A1221 are separated by 2 nucleotides Rru_A1221 and Rru_A1222 are separated by 36 nucleotides
Rru_A1220: Rru_A1220 - Phage integrase (NCBI), at 1,439,943 to 1,440,935
_A1220
Rru_A1221: Rru_A1221 - hypothetical protein (NCBI), at 1,440,938 to 1,441,924
_A1221
Rru_A1222: Rru_A1222 - Primosomal protein n (NCBI), at 1,441,961 to 1,444,396
_A1222
Position (kb)
1440
1441
1442 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1440.919 kb on - strand at 1441.126 kb on + strand, within Rru_A1221 at 1441.126 kb on + strand, within Rru_A1221 at 1441.126 kb on + strand, within Rru_A1221 at 1441.127 kb on - strand, within Rru_A1221 at 1441.127 kb on - strand, within Rru_A1221 at 1441.127 kb on - strand, within Rru_A1221 at 1441.134 kb on + strand, within Rru_A1221 at 1441.134 kb on + strand, within Rru_A1221 at 1441.134 kb on + strand, within Rru_A1221 at 1441.134 kb on + strand, within Rru_A1221 at 1441.134 kb on + strand, within Rru_A1221 at 1441.135 kb on - strand, within Rru_A1221 at 1441.135 kb on - strand, within Rru_A1221 at 1441.135 kb on - strand, within Rru_A1221 at 1441.135 kb on - strand, within Rru_A1221 at 1441.516 kb on + strand, within Rru_A1221 at 1441.608 kb on - strand, within Rru_A1221 at 1441.828 kb on + strand at 1441.828 kb on + strand at 1441.853 kb on + strand at 1441.853 kb on + strand at 1441.859 kb on + strand at 1441.889 kb on + strand at 1441.889 kb on + strand at 1441.889 kb on + strand at 1441.890 kb on - strand at 1441.891 kb on + strand at 1441.891 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 1,440,919 - -0.2 1,441,126 + Rru_A1221 0.19 -3.3 1,441,126 + Rru_A1221 0.19 -1.1 1,441,126 + Rru_A1221 0.19 -0.9 1,441,127 - Rru_A1221 0.19 -0.4 1,441,127 - Rru_A1221 0.19 -0.5 1,441,127 - Rru_A1221 0.19 -1.0 1,441,134 + Rru_A1221 0.20 -1.2 1,441,134 + Rru_A1221 0.20 -1.6 1,441,134 + Rru_A1221 0.20 -1.4 1,441,134 + Rru_A1221 0.20 -0.4 1,441,134 + Rru_A1221 0.20 -1.4 1,441,135 - Rru_A1221 0.20 +0.8 1,441,135 - Rru_A1221 0.20 -2.7 1,441,135 - Rru_A1221 0.20 -1.6 1,441,135 - Rru_A1221 0.20 +0.6 1,441,516 + Rru_A1221 0.59 -0.8 1,441,608 - Rru_A1221 0.68 -2.1 1,441,828 + -0.3 1,441,828 + -0.6 1,441,853 + -0.4 1,441,853 + +0.5 1,441,859 + +1.8 1,441,889 + +0.7 1,441,889 + +0.3 1,441,889 + +0.8 1,441,890 - +0.2 1,441,891 + +0.2 1,441,891 + -1.9
Or see this region's nucleotide sequence