Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1047 and Rru_A1048 are separated by 184 nucleotides Rru_A1048 and Rru_A1049 overlap by 11 nucleotides Rru_A1049 and Rru_A1050 are separated by 204 nucleotides Rru_A1050 and Rru_A1051 are separated by 3 nucleotides
Rru_A1047: Rru_A1047 - 6-phosphofructokinase (NCBI), at 1,240,770 to 1,241,870
_A1047
Rru_A1048: Rru_A1048 - Protein of unknown function DUF465 (NCBI), at 1,242,055 to 1,242,261
_A1048
Rru_A1049: Rru_A1049 - GGDEF family protein (NCBI), at 1,242,251 to 1,243,084
_A1049
Rru_A1050: Rru_A1050 - Phosphoribosylaminoimidazole carboxylase (NCBI), at 1,243,289 to 1,243,792
_A1050
Rru_A1051: Rru_A1051 - Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI), at 1,243,796 to 1,244,890
_A1051
Position (kb)
1242
1243
1244 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1241.416 kb on + strand, within Rru_A1047 at 1241.770 kb on + strand at 1241.770 kb on + strand at 1241.858 kb on + strand at 1241.858 kb on + strand at 1241.859 kb on - strand at 1241.859 kb on - strand at 1241.891 kb on + strand at 1241.891 kb on + strand at 1241.892 kb on - strand at 1241.899 kb on + strand at 1241.899 kb on + strand at 1241.900 kb on - strand at 1241.958 kb on + strand at 1241.959 kb on - strand at 1241.960 kb on + strand at 1241.960 kb on + strand at 1241.961 kb on - strand at 1241.961 kb on - strand at 1241.961 kb on - strand at 1241.998 kb on - strand at 1242.092 kb on + strand, within Rru_A1048 at 1242.102 kb on - strand, within Rru_A1048 at 1242.195 kb on + strand, within Rru_A1048 at 1242.196 kb on - strand, within Rru_A1048 at 1242.272 kb on + strand at 1242.639 kb on + strand, within Rru_A1049 at 1242.639 kb on + strand, within Rru_A1049 at 1242.639 kb on + strand, within Rru_A1049 at 1242.639 kb on + strand, within Rru_A1049 at 1242.639 kb on + strand, within Rru_A1049 at 1242.640 kb on - strand, within Rru_A1049 at 1242.640 kb on - strand, within Rru_A1049 at 1243.012 kb on - strand at 1243.012 kb on - strand at 1243.158 kb on + strand at 1243.158 kb on + strand at 1243.158 kb on + strand at 1243.158 kb on + strand at 1243.159 kb on - strand at 1243.159 kb on - strand at 1243.159 kb on - strand at 1243.159 kb on - strand at 1243.159 kb on - strand at 1243.159 kb on - strand at 1243.174 kb on + strand at 1243.174 kb on + strand at 1243.248 kb on + strand at 1243.999 kb on - strand, within Rru_A1051
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 1,241,416 + Rru_A1047 0.59 -3.4 1,241,770 + -1.7 1,241,770 + -1.7 1,241,858 + -0.5 1,241,858 + +0.1 1,241,859 - -1.1 1,241,859 - +0.1 1,241,891 + +0.6 1,241,891 + -0.3 1,241,892 - +0.3 1,241,899 + -0.3 1,241,899 + -1.3 1,241,900 - +1.7 1,241,958 + -1.9 1,241,959 - -1.1 1,241,960 + -2.3 1,241,960 + +0.2 1,241,961 - -0.6 1,241,961 - -1.1 1,241,961 - +0.2 1,241,998 - -2.4 1,242,092 + Rru_A1048 0.18 -4.9 1,242,102 - Rru_A1048 0.23 -2.5 1,242,195 + Rru_A1048 0.68 -2.4 1,242,196 - Rru_A1048 0.68 -3.7 1,242,272 + -1.1 1,242,639 + Rru_A1049 0.47 -1.3 1,242,639 + Rru_A1049 0.47 -1.6 1,242,639 + Rru_A1049 0.47 -2.5 1,242,639 + Rru_A1049 0.47 -3.4 1,242,639 + Rru_A1049 0.47 -3.6 1,242,640 - Rru_A1049 0.47 -0.0 1,242,640 - Rru_A1049 0.47 -2.3 1,243,012 - +0.5 1,243,012 - +2.5 1,243,158 + -1.6 1,243,158 + -2.1 1,243,158 + -1.8 1,243,158 + -0.2 1,243,159 - -1.0 1,243,159 - +0.3 1,243,159 - -0.0 1,243,159 - -2.7 1,243,159 - -0.2 1,243,159 - -1.0 1,243,174 + -1.6 1,243,174 + -1.2 1,243,248 + -1.7 1,243,999 - Rru_A1051 0.19 +1.1
Or see this region's nucleotide sequence