Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0818

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0817 and Rru_A0818 overlap by 23 nucleotidesRru_A0818 and Rru_A0819 are separated by 662 nucleotides Rru_A0817: Rru_A0817 - Transposase, mutator type (NCBI), at 973,250 to 973,960 _A0817 Rru_A0818: Rru_A0818 - hypothetical protein (NCBI), at 973,938 to 974,273 _A0818 Rru_A0819: Rru_A0819 - Asparagine synthase (NCBI), at 974,936 to 976,897 _A0819 Position (kb) 973 974 975Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 973.158 kb on - strandat 973.250 kb on - strandat 973.257 kb on - strandat 973.257 kb on - strandat 973.493 kb on + strand, within Rru_A0817at 973.493 kb on + strand, within Rru_A0817at 973.494 kb on - strand, within Rru_A0817at 973.711 kb on - strand, within Rru_A0817at 973.958 kb on + strandat 973.959 kb on - strandat 973.959 kb on - strandat 974.155 kb on + strand, within Rru_A0818at 974.155 kb on + strand, within Rru_A0818at 974.155 kb on + strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.528 kb on + strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.533 kb on - strandat 974.533 kb on - strandat 974.659 kb on + strandat 974.659 kb on + strandat 974.659 kb on + strandat 974.660 kb on - strandat 974.674 kb on - strandat 974.714 kb on + strandat 974.714 kb on + strandat 974.714 kb on + strandat 974.714 kb on + strandat 974.715 kb on - strandat 974.878 kb on + strandat 974.878 kb on + strandat 974.879 kb on - strandat 974.879 kb on - strandat 974.879 kb on - strandat 974.980 kb on + strandat 974.980 kb on + strandat 974.980 kb on + strandat 974.981 kb on - strandat 974.981 kb on - strandat 974.981 kb on - strandat 975.023 kb on + strandat 975.024 kb on - strandat 975.148 kb on + strand, within Rru_A0819at 975.149 kb on - strand, within Rru_A0819at 975.149 kb on - strand, within Rru_A0819at 975.264 kb on - strand, within Rru_A0819

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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973,158 - -0.5
973,250 - +0.1
973,257 - +0.4
973,257 - +0.7
973,493 + Rru_A0817 0.34 +0.7
973,493 + Rru_A0817 0.34 +0.1
973,494 - Rru_A0817 0.34 -0.9
973,711 - Rru_A0817 0.65 +0.3
973,958 + +1.1
973,959 - +0.2
973,959 - -0.5
974,155 + Rru_A0818 0.65 -1.6
974,155 + Rru_A0818 0.65 -0.2
974,155 + Rru_A0818 0.65 -0.6
974,156 - Rru_A0818 0.65 -3.4
974,156 - Rru_A0818 0.65 +0.2
974,156 - Rru_A0818 0.65 -0.4
974,156 - Rru_A0818 0.65 +0.1
974,528 + +1.0
974,529 - -0.5
974,529 - +0.7
974,529 - -0.0
974,529 - -1.4
974,529 - -0.8
974,529 - +0.3
974,529 - -2.2
974,533 - +0.4
974,533 - +0.2
974,659 + +0.3
974,659 + +1.7
974,659 + -1.4
974,660 - -0.8
974,674 - -2.5
974,714 + +0.0
974,714 + +0.1
974,714 + +1.8
974,714 + +0.5
974,715 - +0.2
974,878 + +0.5
974,878 + -1.5
974,879 - -1.1
974,879 - +0.7
974,879 - +1.1
974,980 + -0.3
974,980 + +0.2
974,980 + -4.6
974,981 - +0.2
974,981 - +0.4
974,981 - +0.4
975,023 + +0.3
975,024 - +0.6
975,148 + Rru_A0819 0.11 +0.3
975,149 - Rru_A0819 0.11 -4.5
975,149 - Rru_A0819 0.11 +0.1
975,264 - Rru_A0819 0.17 +1.5

Or see this region's nucleotide sequence