Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0700

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0698 and Rru_A0699 are separated by 398 nucleotidesRru_A0699 and Rru_A0700 are separated by 8 nucleotidesRru_A0700 and Rru_A0701 are separated by 343 nucleotides Rru_A0698: Rru_A0698 - Lipolytic enzyme (NCBI), at 827,771 to 828,802 _A0698 Rru_A0699: Rru_A0699 - Plasmid stabilization system (NCBI), at 829,201 to 829,515 _A0699 Rru_A0700: Rru_A0700 - Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain (NCBI), at 829,524 to 829,766 _A0700 Rru_A0701: Rru_A0701 - Ribosomal protein S4 (NCBI), at 830,110 to 830,724 _A0701 Position (kb) 829 830Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 828.606 kb on + strand, within Rru_A0698at 828.606 kb on + strand, within Rru_A0698at 828.606 kb on + strand, within Rru_A0698at 828.974 kb on - strandat 829.041 kb on + strandat 829.042 kb on - strandat 829.042 kb on - strandat 829.042 kb on - strandat 829.217 kb on + strandat 829.217 kb on + strandat 829.218 kb on - strandat 829.220 kb on + strandat 829.220 kb on + strandat 829.221 kb on - strandat 829.221 kb on - strandat 829.221 kb on - strandat 829.261 kb on + strand, within Rru_A0699at 829.262 kb on - strand, within Rru_A0699at 829.262 kb on - strand, within Rru_A0699at 829.272 kb on + strand, within Rru_A0699at 829.273 kb on - strand, within Rru_A0699at 829.302 kb on - strand, within Rru_A0699at 829.419 kb on - strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.421 kb on + strand, within Rru_A0699at 829.460 kb on + strand, within Rru_A0699at 829.460 kb on + strand, within Rru_A0699at 829.460 kb on + strand, within Rru_A0699at 829.461 kb on - strand, within Rru_A0699at 829.461 kb on - strand, within Rru_A0699at 829.461 kb on - strand, within Rru_A0699at 829.729 kb on + strand, within Rru_A0700at 829.783 kb on + strandat 829.784 kb on - strandat 829.808 kb on + strandat 829.808 kb on + strandat 829.808 kb on + strandat 829.809 kb on - strandat 829.809 kb on - strandat 829.809 kb on - strandat 829.809 kb on - strandat 829.810 kb on + strandat 829.810 kb on + strandat 829.811 kb on - strandat 829.811 kb on - strandat 829.811 kb on - strandat 829.811 kb on - strandat 829.830 kb on + strandat 829.831 kb on - strandat 829.831 kb on - strandat 829.908 kb on + strandat 829.993 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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828,606 + Rru_A0698 0.81 -2.6
828,606 + Rru_A0698 0.81 -0.1
828,606 + Rru_A0698 0.81 +0.4
828,974 - -0.6
829,041 + -0.8
829,042 - +0.5
829,042 - +0.4
829,042 - +0.1
829,217 + -0.8
829,217 + +0.8
829,218 - -0.8
829,220 + +1.1
829,220 + +0.4
829,221 - +0.3
829,221 - +0.1
829,221 - -2.8
829,261 + Rru_A0699 0.19 +0.3
829,262 - Rru_A0699 0.19 +1.5
829,262 - Rru_A0699 0.19 +0.1
829,272 + Rru_A0699 0.23 -0.3
829,273 - Rru_A0699 0.23 +0.4
829,302 - Rru_A0699 0.32 -0.5
829,419 - Rru_A0699 0.69 -0.2
829,421 + Rru_A0699 0.70 +0.0
829,421 + Rru_A0699 0.70 -0.6
829,421 + Rru_A0699 0.70 -1.8
829,421 + Rru_A0699 0.70 +0.0
829,421 + Rru_A0699 0.70 -1.9
829,421 + Rru_A0699 0.70 +0.1
829,421 + Rru_A0699 0.70 -0.2
829,460 + Rru_A0699 0.82 -0.9
829,460 + Rru_A0699 0.82 -0.1
829,460 + Rru_A0699 0.82 -1.0
829,461 - Rru_A0699 0.83 -0.1
829,461 - Rru_A0699 0.83 +0.0
829,461 - Rru_A0699 0.83 -3.7
829,729 + Rru_A0700 0.84 -2.1
829,783 + +1.2
829,784 - +0.1
829,808 + -0.2
829,808 + +0.5
829,808 + +2.5
829,809 - +0.6
829,809 - -0.5
829,809 - +0.4
829,809 - +0.7
829,810 + -3.7
829,810 + +0.2
829,811 - +1.3
829,811 - +0.5
829,811 - -0.0
829,811 - -0.2
829,830 + +0.4
829,831 - -0.1
829,831 - -0.7
829,908 + +0.1
829,993 + -0.2

Or see this region's nucleotide sequence