Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0619

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0618 and Rru_A0619 overlap by 13 nucleotidesRru_A0619 and Rru_A0620 overlap by 1 nucleotidesRru_A0620 and Rru_A0621 are separated by 34 nucleotides Rru_A0618: Rru_A0618 - PUCC protein (NCBI), at 732,044 to 733,486 _A0618 Rru_A0619: Rru_A0619 - Magnesium protoporphyrin O-methyltransferase (NCBI), at 733,474 to 734,184 _A0619 Rru_A0620: Rru_A0620 - Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI), at 734,184 to 735,071 _A0620 Rru_A0621: Rru_A0621 - Magnesium-chelatase, subunit H (NCBI), at 735,106 to 738,834 _A0621 Position (kb) 733 734 735Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 732.630 kb on + strand, within Rru_A0618at 732.630 kb on + strand, within Rru_A0618at 732.631 kb on - strand, within Rru_A0618at 732.631 kb on - strand, within Rru_A0618at 732.936 kb on + strand, within Rru_A0618at 732.936 kb on + strand, within Rru_A0618at 732.936 kb on + strand, within Rru_A0618at 732.937 kb on - strand, within Rru_A0618at 732.937 kb on - strand, within Rru_A0618at 732.937 kb on - strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.168 kb on + strand, within Rru_A0618at 733.169 kb on - strand, within Rru_A0618at 733.169 kb on - strand, within Rru_A0618at 733.169 kb on - strand, within Rru_A0618at 733.169 kb on - strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.170 kb on + strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.171 kb on - strand, within Rru_A0618at 733.518 kb on - strandat 733.518 kb on - strandat 733.518 kb on - strandat 733.518 kb on - strandat 733.770 kb on - strand, within Rru_A0619at 733.770 kb on - strand, within Rru_A0619at 733.914 kb on + strand, within Rru_A0619at 734.139 kb on - strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.169 kb on - strandat 734.169 kb on - strandat 734.220 kb on + strandat 734.221 kb on - strandat 734.221 kb on - strandat 734.281 kb on + strand, within Rru_A0620at 734.282 kb on - strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.692 kb on + strand, within Rru_A0620at 734.692 kb on + strand, within Rru_A0620at 734.752 kb on + strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.969 kb on - strand, within Rru_A0620at 735.074 kb on + strandat 735.075 kb on - strandat 735.075 kb on - strandat 735.075 kb on - strandat 735.078 kb on + strandat 735.078 kb on + strandat 735.078 kb on + strandat 735.079 kb on - strandat 735.127 kb on + strandat 735.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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732,630 + Rru_A0618 0.41 -1.7
732,630 + Rru_A0618 0.41 -3.0
732,631 - Rru_A0618 0.41 +0.4
732,631 - Rru_A0618 0.41 -1.7
732,936 + Rru_A0618 0.62 -1.0
732,936 + Rru_A0618 0.62 -2.8
732,936 + Rru_A0618 0.62 -3.0
732,937 - Rru_A0618 0.62 -1.1
732,937 - Rru_A0618 0.62 -4.1
732,937 - Rru_A0618 0.62 -2.6
733,168 + Rru_A0618 0.78 -5.0
733,168 + Rru_A0618 0.78 -3.7
733,168 + Rru_A0618 0.78 -0.7
733,168 + Rru_A0618 0.78 -2.7
733,168 + Rru_A0618 0.78 -3.3
733,168 + Rru_A0618 0.78 -2.1
733,168 + Rru_A0618 0.78 -1.5
733,169 - Rru_A0618 0.78 -2.9
733,169 - Rru_A0618 0.78 -1.9
733,169 - Rru_A0618 0.78 -2.2
733,169 - Rru_A0618 0.78 -1.4
733,170 + Rru_A0618 0.78 -2.9
733,170 + Rru_A0618 0.78 -1.0
733,170 + Rru_A0618 0.78 -2.2
733,170 + Rru_A0618 0.78 -1.7
733,170 + Rru_A0618 0.78 -0.6
733,170 + Rru_A0618 0.78 -3.2
733,170 + Rru_A0618 0.78 -2.1
733,170 + Rru_A0618 0.78 -4.9
733,170 + Rru_A0618 0.78 -1.9
733,170 + Rru_A0618 0.78 -4.7
733,170 + Rru_A0618 0.78 -4.6
733,171 - Rru_A0618 0.78 -0.0
733,171 - Rru_A0618 0.78 -2.9
733,171 - Rru_A0618 0.78 -0.6
733,171 - Rru_A0618 0.78 -2.2
733,171 - Rru_A0618 0.78 -1.5
733,171 - Rru_A0618 0.78 -3.6
733,171 - Rru_A0618 0.78 -2.8
733,171 - Rru_A0618 0.78 -1.4
733,171 - Rru_A0618 0.78 -1.2
733,518 - -1.4
733,518 - -0.6
733,518 - -2.3
733,518 - -1.5
733,770 - Rru_A0619 0.42 -2.4
733,770 - Rru_A0619 0.42 -1.3
733,914 + Rru_A0619 0.62 -4.2
734,139 - -1.7
734,168 + -1.8
734,168 + -0.3
734,168 + -3.4
734,168 + -4.1
734,169 - -2.7
734,169 - -1.2
734,220 + -1.6
734,221 - -1.6
734,221 - -0.5
734,281 + Rru_A0620 0.11 -2.8
734,282 - Rru_A0620 0.11 -2.7
734,476 + Rru_A0620 0.33 -2.3
734,476 + Rru_A0620 0.33 -0.3
734,476 + Rru_A0620 0.33 -0.3
734,476 + Rru_A0620 0.33 -4.7
734,692 + Rru_A0620 0.57 -2.8
734,692 + Rru_A0620 0.57 -2.2
734,752 + Rru_A0620 0.64 -1.4
734,753 - Rru_A0620 0.64 -2.9
734,753 - Rru_A0620 0.64 -2.8
734,753 - Rru_A0620 0.64 +0.5
734,753 - Rru_A0620 0.64 -0.4
734,968 + Rru_A0620 0.88 -1.1
734,968 + Rru_A0620 0.88 -1.8
734,968 + Rru_A0620 0.88 -1.6
734,968 + Rru_A0620 0.88 -2.4
734,969 - Rru_A0620 0.88 -1.2
735,074 + -3.4
735,075 - +0.9
735,075 - -0.6
735,075 - -0.3
735,078 + -1.0
735,078 + -2.1
735,078 + -0.5
735,079 - -0.2
735,127 + -2.4
735,127 + -1.4

Or see this region's nucleotide sequence