Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0478

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_AR0016 and Rru_A0477 are separated by 140 nucleotidesRru_A0477 and Rru_A0478 are separated by 145 nucleotidesRru_A0478 and Rru_A0479 are separated by 91 nucleotides Rru_AR0016: Rru_AR0016 - tRNA-Lys (NCBI), at 559,697 to 559,772 _AR0016 Rru_A0477: Rru_A0477 - hypothetical protein (NCBI), at 559,913 to 560,608 _A0477 Rru_A0478: Rru_A0478 - Radical SAM (NCBI), at 560,754 to 562,100 _A0478 Rru_A0479: Rru_A0479 - Radical SAM (NCBI), at 562,192 to 563,694 _A0479 Position (kb) 560 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 559.874 kb on - strandat 560.008 kb on + strand, within Rru_A0477at 560.380 kb on + strand, within Rru_A0477at 560.393 kb on - strand, within Rru_A0477at 560.792 kb on - strandat 560.792 kb on - strandat 560.792 kb on - strandat 561.124 kb on + strand, within Rru_A0478at 561.124 kb on + strand, within Rru_A0478at 561.124 kb on + strand, within Rru_A0478at 561.124 kb on + strand, within Rru_A0478at 561.125 kb on - strand, within Rru_A0478at 561.125 kb on - strand, within Rru_A0478at 561.125 kb on - strand, within Rru_A0478at 561.131 kb on + strand, within Rru_A0478at 561.132 kb on - strand, within Rru_A0478at 561.132 kb on - strand, within Rru_A0478at 561.132 kb on - strand, within Rru_A0478at 561.133 kb on + strand, within Rru_A0478at 561.134 kb on - strand, within Rru_A0478at 561.134 kb on - strand, within Rru_A0478at 561.236 kb on + strand, within Rru_A0478at 561.304 kb on - strand, within Rru_A0478at 561.304 kb on - strand, within Rru_A0478at 561.386 kb on + strand, within Rru_A0478at 561.387 kb on - strand, within Rru_A0478at 561.387 kb on - strand, within Rru_A0478at 561.387 kb on - strand, within Rru_A0478at 561.407 kb on - strand, within Rru_A0478at 561.410 kb on - strand, within Rru_A0478at 561.451 kb on + strand, within Rru_A0478at 561.451 kb on + strand, within Rru_A0478at 561.451 kb on + strand, within Rru_A0478at 561.452 kb on - strand, within Rru_A0478at 561.452 kb on - strand, within Rru_A0478at 561.565 kb on + strand, within Rru_A0478at 561.565 kb on + strand, within Rru_A0478at 561.566 kb on - strand, within Rru_A0478at 561.769 kb on + strand, within Rru_A0478at 561.769 kb on + strand, within Rru_A0478at 561.769 kb on + strand, within Rru_A0478at 561.770 kb on - strand, within Rru_A0478at 561.770 kb on - strand, within Rru_A0478at 561.814 kb on + strand, within Rru_A0478at 561.814 kb on + strand, within Rru_A0478at 561.815 kb on - strand, within Rru_A0478at 561.815 kb on - strand, within Rru_A0478at 561.815 kb on - strand, within Rru_A0478at 561.847 kb on + strand, within Rru_A0478at 561.848 kb on - strand, within Rru_A0478at 561.848 kb on - strand, within Rru_A0478at 561.848 kb on - strand, within Rru_A0478at 561.848 kb on - strand, within Rru_A0478at 561.868 kb on + strand, within Rru_A0478at 561.868 kb on + strand, within Rru_A0478at 561.868 kb on + strand, within Rru_A0478at 562.260 kb on - strandat 562.260 kb on - strandat 562.260 kb on - strandat 562.265 kb on + strandat 562.265 kb on + strandat 562.265 kb on + strandat 562.266 kb on - strandat 562.266 kb on - strandat 562.268 kb on + strandat 562.268 kb on + strandat 562.269 kb on - strandat 562.269 kb on - strandat 562.269 kb on - strandat 562.269 kb on - strandat 562.339 kb on - strandat 562.339 kb on - strandat 562.436 kb on + strand, within Rru_A0479at 562.436 kb on + strand, within Rru_A0479at 562.436 kb on + strand, within Rru_A0479at 562.437 kb on - strand, within Rru_A0479at 562.448 kb on + strand, within Rru_A0479at 562.716 kb on - strand, within Rru_A0479at 562.716 kb on - strand, within Rru_A0479at 562.716 kb on - strand, within Rru_A0479at 562.751 kb on + strand, within Rru_A0479at 562.751 kb on + strand, within Rru_A0479at 562.751 kb on + strand, within Rru_A0479at 562.752 kb on - strand, within Rru_A0479at 562.752 kb on - strand, within Rru_A0479at 562.752 kb on - strand, within Rru_A0479at 562.888 kb on - strand, within Rru_A0479at 563.098 kb on - strand, within Rru_A0479at 563.098 kb on - strand, within Rru_A0479

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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559,874 - +0.5
560,008 + Rru_A0477 0.14 -0.6
560,380 + Rru_A0477 0.67 +0.1
560,393 - Rru_A0477 0.69 +0.5
560,792 - +2.6
560,792 - +0.0
560,792 - -1.4
561,124 + Rru_A0478 0.27 +0.1
561,124 + Rru_A0478 0.27 -0.3
561,124 + Rru_A0478 0.27 +2.4
561,124 + Rru_A0478 0.27 -1.4
561,125 - Rru_A0478 0.28 +0.3
561,125 - Rru_A0478 0.28 +0.2
561,125 - Rru_A0478 0.28 +2.0
561,131 + Rru_A0478 0.28 +1.1
561,132 - Rru_A0478 0.28 +0.5
561,132 - Rru_A0478 0.28 -0.8
561,132 - Rru_A0478 0.28 +1.1
561,133 + Rru_A0478 0.28 +0.1
561,134 - Rru_A0478 0.28 +0.1
561,134 - Rru_A0478 0.28 +0.5
561,236 + Rru_A0478 0.36 -1.8
561,304 - Rru_A0478 0.41 +0.8
561,304 - Rru_A0478 0.41 -0.9
561,386 + Rru_A0478 0.47 -0.2
561,387 - Rru_A0478 0.47 -0.5
561,387 - Rru_A0478 0.47 +0.4
561,387 - Rru_A0478 0.47 -0.1
561,407 - Rru_A0478 0.48 +1.9
561,410 - Rru_A0478 0.49 +0.5
561,451 + Rru_A0478 0.52 -1.1
561,451 + Rru_A0478 0.52 +0.1
561,451 + Rru_A0478 0.52 -0.6
561,452 - Rru_A0478 0.52 +0.6
561,452 - Rru_A0478 0.52 +0.2
561,565 + Rru_A0478 0.60 -0.7
561,565 + Rru_A0478 0.60 +0.4
561,566 - Rru_A0478 0.60 -0.0
561,769 + Rru_A0478 0.75 -0.5
561,769 + Rru_A0478 0.75 +0.8
561,769 + Rru_A0478 0.75 -2.3
561,770 - Rru_A0478 0.75 +0.2
561,770 - Rru_A0478 0.75 +1.0
561,814 + Rru_A0478 0.79 -3.7
561,814 + Rru_A0478 0.79 +0.5
561,815 - Rru_A0478 0.79 -1.5
561,815 - Rru_A0478 0.79 +0.0
561,815 - Rru_A0478 0.79 +0.6
561,847 + Rru_A0478 0.81 -0.9
561,848 - Rru_A0478 0.81 +0.2
561,848 - Rru_A0478 0.81 -0.2
561,848 - Rru_A0478 0.81 +1.7
561,848 - Rru_A0478 0.81 +0.6
561,868 + Rru_A0478 0.83 -1.7
561,868 + Rru_A0478 0.83 -0.0
561,868 + Rru_A0478 0.83 -0.4
562,260 - +0.3
562,260 - -2.3
562,260 - -1.0
562,265 + -0.2
562,265 + +0.5
562,265 + -1.0
562,266 - +0.3
562,266 - +0.1
562,268 + +1.5
562,268 + -0.5
562,269 - +0.2
562,269 - +3.0
562,269 - +2.5
562,269 - -0.9
562,339 - -1.1
562,339 - +0.8
562,436 + Rru_A0479 0.16 -1.2
562,436 + Rru_A0479 0.16 +0.5
562,436 + Rru_A0479 0.16 +0.2
562,437 - Rru_A0479 0.16 +1.0
562,448 + Rru_A0479 0.17 +0.7
562,716 - Rru_A0479 0.35 +0.4
562,716 - Rru_A0479 0.35 +0.6
562,716 - Rru_A0479 0.35 -0.1
562,751 + Rru_A0479 0.37 +0.3
562,751 + Rru_A0479 0.37 -0.4
562,751 + Rru_A0479 0.37 -1.8
562,752 - Rru_A0479 0.37 +1.9
562,752 - Rru_A0479 0.37 -1.4
562,752 - Rru_A0479 0.37 -0.5
562,888 - Rru_A0479 0.46 +0.1
563,098 - Rru_A0479 0.60 +0.5
563,098 - Rru_A0479 0.60 -1.4

Or see this region's nucleotide sequence