Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0435

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0434 and Rru_A0435 are separated by 200 nucleotidesRru_A0435 and Rru_A0436 are separated by 290 nucleotides Rru_A0434: Rru_A0434 - Organic solvent tolerance protein OstA-like (NCBI), at 506,452 to 509,112 _A0434 Rru_A0435: Rru_A0435 - Acyl-CoA dehydrogenase (NCBI), at 509,313 to 511,082 _A0435 Rru_A0436: Rru_A0436 - hypothetical protein (NCBI), at 511,373 to 511,891 _A0436 Position (kb) 509 510 511 512Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 509.254 kb on + strandat 509.255 kb on - strandat 509.273 kb on - strandat 509.273 kb on - strandat 509.275 kb on - strandat 509.275 kb on - strandat 509.275 kb on - strandat 509.568 kb on - strand, within Rru_A0435at 509.568 kb on - strand, within Rru_A0435at 509.568 kb on - strand, within Rru_A0435at 509.679 kb on + strand, within Rru_A0435at 509.761 kb on + strand, within Rru_A0435at 509.761 kb on + strand, within Rru_A0435at 509.761 kb on + strand, within Rru_A0435at 509.762 kb on - strand, within Rru_A0435at 509.816 kb on + strand, within Rru_A0435at 509.818 kb on + strand, within Rru_A0435at 509.818 kb on + strand, within Rru_A0435at 509.818 kb on + strand, within Rru_A0435at 509.818 kb on + strand, within Rru_A0435at 509.818 kb on + strand, within Rru_A0435at 509.818 kb on + strand, within Rru_A0435at 509.818 kb on + strand, within Rru_A0435at 509.819 kb on - strand, within Rru_A0435at 509.819 kb on - strand, within Rru_A0435at 509.986 kb on + strand, within Rru_A0435at 509.986 kb on + strand, within Rru_A0435at 509.987 kb on - strand, within Rru_A0435at 509.987 kb on - strand, within Rru_A0435at 510.209 kb on + strand, within Rru_A0435at 510.209 kb on + strand, within Rru_A0435at 510.209 kb on + strand, within Rru_A0435at 510.209 kb on + strand, within Rru_A0435at 510.210 kb on - strand, within Rru_A0435at 510.210 kb on - strand, within Rru_A0435at 510.210 kb on - strand, within Rru_A0435at 510.210 kb on - strand, within Rru_A0435at 510.210 kb on - strand, within Rru_A0435at 510.211 kb on + strand, within Rru_A0435at 510.211 kb on + strand, within Rru_A0435at 510.211 kb on + strand, within Rru_A0435at 510.211 kb on + strand, within Rru_A0435at 510.211 kb on + strand, within Rru_A0435at 510.211 kb on + strand, within Rru_A0435at 510.211 kb on + strand, within Rru_A0435at 510.211 kb on + strand, within Rru_A0435at 510.212 kb on - strand, within Rru_A0435at 510.212 kb on - strand, within Rru_A0435at 510.212 kb on - strand, within Rru_A0435at 510.212 kb on - strand, within Rru_A0435at 510.212 kb on - strand, within Rru_A0435at 510.212 kb on - strand, within Rru_A0435at 510.212 kb on - strand, within Rru_A0435at 510.212 kb on - strand, within Rru_A0435at 510.212 kb on - strand, within Rru_A0435at 510.244 kb on + strand, within Rru_A0435at 510.244 kb on + strand, within Rru_A0435at 510.245 kb on - strand, within Rru_A0435at 510.245 kb on - strand, within Rru_A0435at 510.481 kb on + strand, within Rru_A0435at 510.481 kb on + strand, within Rru_A0435at 510.482 kb on - strand, within Rru_A0435at 510.482 kb on - strand, within Rru_A0435at 510.482 kb on - strand, within Rru_A0435at 510.514 kb on + strand, within Rru_A0435at 510.514 kb on + strand, within Rru_A0435at 510.514 kb on + strand, within Rru_A0435at 510.515 kb on - strand, within Rru_A0435at 510.515 kb on - strand, within Rru_A0435at 510.515 kb on - strand, within Rru_A0435at 510.791 kb on - strand, within Rru_A0435at 510.841 kb on + strand, within Rru_A0435at 510.842 kb on - strand, within Rru_A0435at 510.842 kb on - strand, within Rru_A0435at 510.842 kb on - strand, within Rru_A0435at 510.842 kb on - strand, within Rru_A0435at 510.842 kb on - strand, within Rru_A0435at 511.091 kb on + strandat 511.092 kb on - strandat 511.092 kb on - strandat 511.092 kb on - strandat 511.189 kb on - strandat 511.189 kb on - strandat 511.889 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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509,254 + -0.1
509,255 - -1.3
509,273 - -1.0
509,273 - -0.4
509,275 - -0.5
509,275 - -0.6
509,275 - +0.1
509,568 - Rru_A0435 0.14 -2.1
509,568 - Rru_A0435 0.14 -0.5
509,568 - Rru_A0435 0.14 -0.2
509,679 + Rru_A0435 0.21 -0.8
509,761 + Rru_A0435 0.25 +1.0
509,761 + Rru_A0435 0.25 -3.3
509,761 + Rru_A0435 0.25 -2.0
509,762 - Rru_A0435 0.25 -0.7
509,816 + Rru_A0435 0.28 -2.6
509,818 + Rru_A0435 0.29 -1.0
509,818 + Rru_A0435 0.29 -2.5
509,818 + Rru_A0435 0.29 -2.8
509,818 + Rru_A0435 0.29 -1.8
509,818 + Rru_A0435 0.29 -2.7
509,818 + Rru_A0435 0.29 -1.0
509,818 + Rru_A0435 0.29 -2.0
509,819 - Rru_A0435 0.29 -1.3
509,819 - Rru_A0435 0.29 -1.7
509,986 + Rru_A0435 0.38 -1.5
509,986 + Rru_A0435 0.38 -1.2
509,987 - Rru_A0435 0.38 -3.9
509,987 - Rru_A0435 0.38 -1.6
510,209 + Rru_A0435 0.51 -0.9
510,209 + Rru_A0435 0.51 -3.3
510,209 + Rru_A0435 0.51 -3.0
510,209 + Rru_A0435 0.51 -3.7
510,210 - Rru_A0435 0.51 -0.9
510,210 - Rru_A0435 0.51 -4.4
510,210 - Rru_A0435 0.51 -1.1
510,210 - Rru_A0435 0.51 -1.7
510,210 - Rru_A0435 0.51 -3.0
510,211 + Rru_A0435 0.51 -0.5
510,211 + Rru_A0435 0.51 -1.1
510,211 + Rru_A0435 0.51 -2.5
510,211 + Rru_A0435 0.51 -0.1
510,211 + Rru_A0435 0.51 -4.6
510,211 + Rru_A0435 0.51 -3.9
510,211 + Rru_A0435 0.51 -1.3
510,211 + Rru_A0435 0.51 -3.4
510,212 - Rru_A0435 0.51 -0.4
510,212 - Rru_A0435 0.51 -1.2
510,212 - Rru_A0435 0.51 -2.2
510,212 - Rru_A0435 0.51 +0.7
510,212 - Rru_A0435 0.51 -0.8
510,212 - Rru_A0435 0.51 -1.4
510,212 - Rru_A0435 0.51 -1.4
510,212 - Rru_A0435 0.51 -2.3
510,212 - Rru_A0435 0.51 -2.0
510,244 + Rru_A0435 0.53 +0.6
510,244 + Rru_A0435 0.53 -0.9
510,245 - Rru_A0435 0.53 -1.3
510,245 - Rru_A0435 0.53 -4.2
510,481 + Rru_A0435 0.66 -1.7
510,481 + Rru_A0435 0.66 -2.3
510,482 - Rru_A0435 0.66 -1.7
510,482 - Rru_A0435 0.66 -4.3
510,482 - Rru_A0435 0.66 -0.9
510,514 + Rru_A0435 0.68 -1.6
510,514 + Rru_A0435 0.68 -1.5
510,514 + Rru_A0435 0.68 -1.0
510,515 - Rru_A0435 0.68 -1.2
510,515 - Rru_A0435 0.68 -0.5
510,515 - Rru_A0435 0.68 -1.4
510,791 - Rru_A0435 0.84 -3.1
510,841 + Rru_A0435 0.86 -2.6
510,842 - Rru_A0435 0.86 -0.8
510,842 - Rru_A0435 0.86 -2.4
510,842 - Rru_A0435 0.86 -2.6
510,842 - Rru_A0435 0.86 -0.8
510,842 - Rru_A0435 0.86 -3.6
511,091 + -1.9
511,092 - -2.1
511,092 - -2.5
511,092 - -1.6
511,189 - +1.2
511,189 - -2.0
511,889 + -0.3

Or see this region's nucleotide sequence