Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0371

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0369 and Rru_A0370 are separated by 5 nucleotidesRru_A0370 and Rru_A0371 overlap by 4 nucleotidesRru_A0371 and Rru_A0372 are separated by 52 nucleotides Rru_A0369: Rru_A0369 - ATPase associated with various cellular activities, AAA_3 (NCBI), at 443,155 to 444,165 _A0369 Rru_A0370: Rru_A0370 - Protein of unknown function DUF58 (NCBI), at 444,171 to 445,109 _A0370 Rru_A0371: Rru_A0371 - Double-transmembrane region-like (NCBI), at 445,106 to 447,889 _A0371 Rru_A0372: Rru_A0372 - hypothetical protein (NCBI), at 447,942 to 450,014 _A0372 Position (kb) 445 446 447 448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 444.435 kb on + strand, within Rru_A0370at 444.495 kb on + strand, within Rru_A0370at 444.496 kb on - strand, within Rru_A0370at 444.496 kb on - strand, within Rru_A0370at 444.496 kb on - strand, within Rru_A0370at 445.123 kb on + strandat 445.123 kb on + strandat 445.139 kb on + strandat 445.139 kb on + strandat 445.139 kb on + strandat 445.140 kb on - strandat 445.140 kb on - strandat 445.140 kb on - strandat 445.140 kb on - strandat 445.276 kb on + strandat 445.277 kb on - strandat 445.349 kb on + strandat 445.349 kb on + strandat 445.349 kb on + strandat 445.349 kb on + strandat 445.350 kb on - strandat 445.351 kb on + strandat 445.459 kb on - strand, within Rru_A0371at 445.459 kb on - strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.120 kb on - strand, within Rru_A0371at 446.195 kb on + strand, within Rru_A0371at 446.196 kb on - strand, within Rru_A0371at 446.196 kb on - strand, within Rru_A0371at 446.196 kb on - strand, within Rru_A0371at 446.891 kb on + strand, within Rru_A0371at 446.892 kb on - strand, within Rru_A0371at 447.254 kb on + strand, within Rru_A0371at 447.254 kb on + strand, within Rru_A0371at 447.254 kb on + strand, within Rru_A0371at 447.255 kb on - strand, within Rru_A0371at 447.255 kb on - strand, within Rru_A0371at 447.408 kb on - strand, within Rru_A0371at 447.408 kb on - strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.471 kb on - strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.599 kb on + strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.744 kb on - strandat 447.744 kb on - strandat 447.791 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.836 kb on + strandat 447.836 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.888 kb on - strandat 447.888 kb on - strandat 447.953 kb on + strandat 447.954 kb on - strandat 447.959 kb on + strandat 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.445 kb on - strand, within Rru_A0372at 448.445 kb on - strand, within Rru_A0372at 448.445 kb on - strand, within Rru_A0372at 448.854 kb on - strand, within Rru_A0372

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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444,435 + Rru_A0370 0.28 -0.6
444,495 + Rru_A0370 0.35 -0.1
444,496 - Rru_A0370 0.35 +2.5
444,496 - Rru_A0370 0.35 -0.4
444,496 - Rru_A0370 0.35 -1.5
445,123 + -2.4
445,123 + -1.5
445,139 + -2.5
445,139 + -0.7
445,139 + -1.1
445,140 - +1.5
445,140 - -0.0
445,140 - +1.5
445,140 - +0.5
445,276 + -0.4
445,277 - +0.9
445,349 + +2.5
445,349 + +0.8
445,349 + -1.9
445,349 + -3.5
445,350 - +0.2
445,351 + +1.5
445,459 - Rru_A0371 0.13 -0.9
445,459 - Rru_A0371 0.13 -2.2
446,119 + Rru_A0371 0.36 +0.9
446,119 + Rru_A0371 0.36 -2.9
446,119 + Rru_A0371 0.36 +0.4
446,119 + Rru_A0371 0.36 -1.3
446,119 + Rru_A0371 0.36 +0.5
446,119 + Rru_A0371 0.36 +0.7
446,120 - Rru_A0371 0.36 +0.8
446,195 + Rru_A0371 0.39 -3.2
446,196 - Rru_A0371 0.39 +2.1
446,196 - Rru_A0371 0.39 +1.6
446,196 - Rru_A0371 0.39 -1.7
446,891 + Rru_A0371 0.64 -2.1
446,892 - Rru_A0371 0.64 +0.5
447,254 + Rru_A0371 0.77 +2.4
447,254 + Rru_A0371 0.77 +2.7
447,254 + Rru_A0371 0.77 -0.1
447,255 - Rru_A0371 0.77 +0.9
447,255 - Rru_A0371 0.77 +3.2
447,408 - Rru_A0371 0.83 -0.2
447,408 - Rru_A0371 0.83 -0.5
447,470 + Rru_A0371 0.85 +0.7
447,470 + Rru_A0371 0.85 +0.2
447,470 + Rru_A0371 0.85 +2.7
447,470 + Rru_A0371 0.85 +3.1
447,470 + Rru_A0371 0.85 -4.3
447,471 - Rru_A0371 0.85 -0.2
447,472 + Rru_A0371 0.85 -1.1
447,472 + Rru_A0371 0.85 -2.4
447,472 + Rru_A0371 0.85 +0.4
447,472 + Rru_A0371 0.85 +3.0
447,473 - Rru_A0371 0.85 +2.5
447,473 - Rru_A0371 0.85 +0.3
447,473 - Rru_A0371 0.85 +0.5
447,473 - Rru_A0371 0.85 +0.2
447,473 - Rru_A0371 0.85 -1.5
447,599 + Rru_A0371 0.90 -3.4
447,600 - Rru_A0371 0.90 +0.9
447,600 - Rru_A0371 0.90 -2.4
447,600 - Rru_A0371 0.90 +0.2
447,600 - Rru_A0371 0.90 -0.0
447,744 - -0.6
447,744 - +0.5
447,791 + -2.5
447,818 + -2.9
447,818 + -2.7
447,818 + +0.6
447,818 + -0.1
447,818 + -1.9
447,819 - +1.0
447,819 - +1.5
447,819 - -1.7
447,819 - -2.3
447,819 - -1.3
447,836 + +0.6
447,836 + +1.5
447,887 + +0.1
447,887 + +0.5
447,887 + +0.0
447,887 + +1.3
447,887 + -0.1
447,888 - -0.7
447,888 - -0.8
447,953 + +0.4
447,954 - +0.0
447,959 + +0.7
448,444 + Rru_A0372 0.24 +1.5
448,444 + Rru_A0372 0.24 +1.2
448,444 + Rru_A0372 0.24 +0.4
448,444 + Rru_A0372 0.24 +0.5
448,444 + Rru_A0372 0.24 +2.5
448,444 + Rru_A0372 0.24 +0.2
448,444 + Rru_A0372 0.24 +1.0
448,444 + Rru_A0372 0.24 +0.1
448,445 - Rru_A0372 0.24 -2.1
448,445 - Rru_A0372 0.24 -2.5
448,445 - Rru_A0372 0.24 -3.4
448,854 - Rru_A0372 0.44 -1.3

Or see this region's nucleotide sequence