Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0146

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0144 and Rru_A0145 are separated by 156 nucleotidesRru_A0145 and Rru_A0146 are separated by 109 nucleotidesRru_A0146 and Rru_A0147 are separated by 96 nucleotides Rru_A0144: Rru_A0144 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 167,512 to 168,615 _A0144 Rru_A0145: Rru_A0145 - Transcriptional Regulator, TetR family (NCBI), at 168,772 to 169,380 _A0145 Rru_A0146: Rru_A0146 - Inorganic diphosphatase (NCBI), at 169,490 to 170,029 _A0146 Rru_A0147: Rru_A0147 - Major facilitator superfamily MFS_1 (NCBI), at 170,126 to 171,778 _A0147 Position (kb) 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.530 kb on + strandat 168.737 kb on - strandat 168.737 kb on - strandat 168.850 kb on + strand, within Rru_A0145at 169.082 kb on + strand, within Rru_A0145at 169.082 kb on + strand, within Rru_A0145at 169.169 kb on + strand, within Rru_A0145at 169.169 kb on + strand, within Rru_A0145at 169.170 kb on - strand, within Rru_A0145at 169.170 kb on - strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.218 kb on + strand, within Rru_A0145at 169.219 kb on - strand, within Rru_A0145at 169.219 kb on - strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.220 kb on + strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 169.221 kb on - strand, within Rru_A0145at 170.084 kb on + strandat 170.085 kb on - strandat 170.301 kb on + strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.302 kb on - strand, within Rru_A0147at 170.344 kb on - strand, within Rru_A0147at 170.344 kb on - strand, within Rru_A0147at 170.574 kb on + strand, within Rru_A0147at 170.574 kb on + strand, within Rru_A0147at 170.574 kb on + strand, within Rru_A0147at 170.574 kb on + strand, within Rru_A0147at 170.575 kb on - strand, within Rru_A0147at 170.575 kb on - strand, within Rru_A0147at 170.575 kb on - strand, within Rru_A0147at 170.575 kb on - strand, within Rru_A0147at 170.613 kb on + strand, within Rru_A0147at 170.613 kb on + strand, within Rru_A0147at 170.614 kb on - strand, within Rru_A0147at 170.614 kb on - strand, within Rru_A0147at 170.614 kb on - strand, within Rru_A0147at 170.701 kb on - strand, within Rru_A0147at 170.731 kb on + strand, within Rru_A0147at 170.732 kb on - strand, within Rru_A0147at 170.733 kb on + strand, within Rru_A0147at 170.733 kb on + strand, within Rru_A0147at 170.733 kb on + strand, within Rru_A0147at 170.733 kb on + strand, within Rru_A0147at 170.734 kb on - strand, within Rru_A0147at 170.734 kb on - strand, within Rru_A0147at 170.734 kb on - strand, within Rru_A0147at 170.734 kb on - strand, within Rru_A0147at 170.734 kb on - strand, within Rru_A0147at 170.949 kb on - strand, within Rru_A0147

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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168,530 + -0.8
168,737 - +0.5
168,737 - +0.8
168,850 + Rru_A0145 0.13 +0.5
169,082 + Rru_A0145 0.51 -0.6
169,082 + Rru_A0145 0.51 -0.0
169,169 + Rru_A0145 0.65 +2.0
169,169 + Rru_A0145 0.65 -0.8
169,170 - Rru_A0145 0.65 -1.2
169,170 - Rru_A0145 0.65 +0.4
169,218 + Rru_A0145 0.73 -1.0
169,218 + Rru_A0145 0.73 -0.5
169,218 + Rru_A0145 0.73 -0.9
169,218 + Rru_A0145 0.73 -2.8
169,219 - Rru_A0145 0.73 -0.5
169,219 - Rru_A0145 0.73 +0.5
169,220 + Rru_A0145 0.74 +0.0
169,220 + Rru_A0145 0.74 +0.2
169,220 + Rru_A0145 0.74 -0.7
169,220 + Rru_A0145 0.74 -0.9
169,220 + Rru_A0145 0.74 -1.1
169,221 - Rru_A0145 0.74 -0.7
169,221 - Rru_A0145 0.74 -1.0
169,221 - Rru_A0145 0.74 -0.3
170,084 + -1.5
170,085 - -2.2
170,301 + Rru_A0147 0.11 -0.1
170,302 - Rru_A0147 0.11 +0.4
170,302 - Rru_A0147 0.11 +1.0
170,302 - Rru_A0147 0.11 -0.7
170,302 - Rru_A0147 0.11 -0.4
170,344 - Rru_A0147 0.13 +0.7
170,344 - Rru_A0147 0.13 +0.8
170,574 + Rru_A0147 0.27 +0.3
170,574 + Rru_A0147 0.27 -0.2
170,574 + Rru_A0147 0.27 +0.6
170,574 + Rru_A0147 0.27 -0.5
170,575 - Rru_A0147 0.27 +0.5
170,575 - Rru_A0147 0.27 +0.6
170,575 - Rru_A0147 0.27 -0.0
170,575 - Rru_A0147 0.27 +0.7
170,613 + Rru_A0147 0.29 +2.0
170,613 + Rru_A0147 0.29 +0.5
170,614 - Rru_A0147 0.30 -0.4
170,614 - Rru_A0147 0.30 +0.2
170,614 - Rru_A0147 0.30 -0.8
170,701 - Rru_A0147 0.35 +2.6
170,731 + Rru_A0147 0.37 +0.0
170,732 - Rru_A0147 0.37 +1.0
170,733 + Rru_A0147 0.37 +0.1
170,733 + Rru_A0147 0.37 +0.2
170,733 + Rru_A0147 0.37 +0.2
170,733 + Rru_A0147 0.37 +0.4
170,734 - Rru_A0147 0.37 +0.8
170,734 - Rru_A0147 0.37 +1.4
170,734 - Rru_A0147 0.37 -0.3
170,734 - Rru_A0147 0.37 -3.1
170,734 - Rru_A0147 0.37 -1.0
170,949 - Rru_A0147 0.50 +0.2

Or see this region's nucleotide sequence