Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0090 and Rru_A0091 are separated by 3 nucleotides Rru_A0091 and Rru_A0092 are separated by 375 nucleotides Rru_A0092 and Rru_A0093 are separated by 45 nucleotides Rru_A0093 and Rru_A0094 overlap by 4 nucleotides
Rru_A0090: Rru_A0090 - Prevent-host-death protein (NCBI), at 104,817 to 105,059
_A0090
Rru_A0091: Rru_A0091 - PilT protein-like (NCBI), at 105,063 to 105,497
_A0091
Rru_A0092: Rru_A0092 - extracellular solute-binding protein, family 1 (NCBI), at 105,873 to 107,150
_A0092
Rru_A0093: Rru_A0093 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 107,196 to 108,065
_A0093
Rru_A0094: Rru_A0094 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 108,062 to 109,000
_A0094
Position (kb)
105
106
107
108 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 105.066 kb on + strand at 105.066 kb on + strand at 105.066 kb on + strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.067 kb on - strand at 105.279 kb on + strand, within Rru_A0091 at 105.280 kb on - strand, within Rru_A0091 at 105.280 kb on - strand, within Rru_A0091 at 105.592 kb on + strand at 105.593 kb on - strand at 105.593 kb on - strand at 105.594 kb on + strand at 105.595 kb on - strand at 105.688 kb on + strand at 105.688 kb on + strand at 105.688 kb on + strand at 105.689 kb on - strand at 105.767 kb on - strand at 106.284 kb on + strand, within Rru_A0092 at 106.284 kb on + strand, within Rru_A0092 at 106.285 kb on - strand, within Rru_A0092 at 106.285 kb on - strand, within Rru_A0092 at 106.296 kb on + strand, within Rru_A0092 at 106.296 kb on + strand, within Rru_A0092 at 106.296 kb on + strand, within Rru_A0092 at 106.296 kb on + strand, within Rru_A0092 at 106.296 kb on + strand, within Rru_A0092 at 106.297 kb on - strand, within Rru_A0092 at 106.297 kb on - strand, within Rru_A0092 at 106.297 kb on - strand, within Rru_A0092 at 106.297 kb on - strand, within Rru_A0092 at 106.316 kb on + strand, within Rru_A0092 at 106.317 kb on - strand, within Rru_A0092 at 106.403 kb on + strand, within Rru_A0092 at 106.521 kb on + strand, within Rru_A0092 at 106.521 kb on + strand, within Rru_A0092 at 107.269 kb on - strand at 107.292 kb on + strand, within Rru_A0093 at 107.328 kb on + strand, within Rru_A0093 at 107.328 kb on + strand, within Rru_A0093 at 107.328 kb on + strand, within Rru_A0093 at 107.353 kb on - strand, within Rru_A0093 at 107.353 kb on - strand, within Rru_A0093 at 107.508 kb on + strand, within Rru_A0093 at 107.508 kb on + strand, within Rru_A0093 at 107.508 kb on + strand, within Rru_A0093 at 107.508 kb on + strand, within Rru_A0093 at 107.508 kb on + strand, within Rru_A0093 at 107.508 kb on + strand, within Rru_A0093 at 107.508 kb on + strand, within Rru_A0093 at 107.508 kb on + strand, within Rru_A0093 at 107.508 kb on + strand, within Rru_A0093 at 107.508 kb on + strand, within Rru_A0093 at 107.509 kb on + strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.509 kb on - strand, within Rru_A0093 at 107.588 kb on + strand, within Rru_A0093 at 107.588 kb on + strand, within Rru_A0093 at 107.588 kb on + strand, within Rru_A0093 at 107.588 kb on + strand, within Rru_A0093 at 107.588 kb on + strand, within Rru_A0093 at 107.589 kb on - strand, within Rru_A0093 at 107.589 kb on - strand, within Rru_A0093 at 107.658 kb on + strand, within Rru_A0093 at 107.658 kb on + strand, within Rru_A0093 at 107.658 kb on + strand, within Rru_A0093 at 107.658 kb on + strand, within Rru_A0093 at 107.658 kb on + strand, within Rru_A0093 at 107.658 kb on + strand, within Rru_A0093 at 107.658 kb on + strand, within Rru_A0093 at 107.659 kb on - strand, within Rru_A0093 at 107.659 kb on - strand, within Rru_A0093 at 107.659 kb on - strand, within Rru_A0093 at 107.659 kb on - strand, within Rru_A0093 at 107.659 kb on - strand, within Rru_A0093 at 107.659 kb on - strand, within Rru_A0093 at 107.661 kb on - strand, within Rru_A0093 at 107.791 kb on - strand, within Rru_A0093 at 107.910 kb on + strand, within Rru_A0093 at 107.911 kb on - strand, within Rru_A0093 at 107.911 kb on - strand, within Rru_A0093 at 107.940 kb on + strand, within Rru_A0093 at 107.940 kb on + strand, within Rru_A0093 at 107.940 kb on + strand, within Rru_A0093 at 107.940 kb on + strand, within Rru_A0093 at 107.940 kb on + strand, within Rru_A0093 at 107.940 kb on + strand, within Rru_A0093 at 107.940 kb on + strand, within Rru_A0093 at 107.941 kb on - strand, within Rru_A0093 at 107.941 kb on - strand, within Rru_A0093 at 107.941 kb on - strand, within Rru_A0093 at 108.030 kb on + strand at 108.030 kb on + strand at 108.036 kb on + strand at 108.036 kb on + strand at 108.076 kb on + strand at 108.076 kb on + strand at 108.077 kb on - strand at 108.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 105,066 + -1.4 105,066 + +2.2 105,066 + +0.2 105,067 - -0.7 105,067 - +0.5 105,067 - +0.2 105,067 - -0.8 105,067 - +0.1 105,067 - -2.5 105,279 + Rru_A0091 0.50 +0.2 105,280 - Rru_A0091 0.50 -1.3 105,280 - Rru_A0091 0.50 +0.2 105,592 + -0.5 105,593 - +0.2 105,593 - -0.1 105,594 + +0.5 105,595 - -0.1 105,688 + -0.8 105,688 + -0.0 105,688 + -1.5 105,689 - +0.4 105,767 - +0.6 106,284 + Rru_A0092 0.32 +1.0 106,284 + Rru_A0092 0.32 +0.1 106,285 - Rru_A0092 0.32 +0.8 106,285 - Rru_A0092 0.32 +0.9 106,296 + Rru_A0092 0.33 +0.3 106,296 + Rru_A0092 0.33 +2.0 106,296 + Rru_A0092 0.33 +0.3 106,296 + Rru_A0092 0.33 +0.1 106,296 + Rru_A0092 0.33 +0.3 106,297 - Rru_A0092 0.33 +0.6 106,297 - Rru_A0092 0.33 +2.5 106,297 - Rru_A0092 0.33 +0.4 106,297 - Rru_A0092 0.33 -0.1 106,316 + Rru_A0092 0.35 +2.0 106,317 - Rru_A0092 0.35 +2.2 106,403 + Rru_A0092 0.41 +0.0 106,521 + Rru_A0092 0.51 +0.7 106,521 + Rru_A0092 0.51 +0.9 107,269 - +0.1 107,292 + Rru_A0093 0.11 -4.0 107,328 + Rru_A0093 0.15 -0.9 107,328 + Rru_A0093 0.15 +0.2 107,328 + Rru_A0093 0.15 +0.6 107,353 - Rru_A0093 0.18 -0.0 107,353 - Rru_A0093 0.18 -1.4 107,508 + Rru_A0093 0.36 +0.9 107,508 + Rru_A0093 0.36 +1.1 107,508 + Rru_A0093 0.36 -1.7 107,508 + Rru_A0093 0.36 +0.5 107,508 + Rru_A0093 0.36 +3.2 107,508 + Rru_A0093 0.36 -1.9 107,508 + Rru_A0093 0.36 -1.2 107,508 + Rru_A0093 0.36 +0.5 107,508 + Rru_A0093 0.36 +1.7 107,508 + Rru_A0093 0.36 +1.8 107,509 + Rru_A0093 0.36 +2.1 107,509 - Rru_A0093 0.36 +2.1 107,509 - Rru_A0093 0.36 +0.6 107,509 - Rru_A0093 0.36 -1.3 107,509 - Rru_A0093 0.36 +0.2 107,509 - Rru_A0093 0.36 +0.8 107,509 - Rru_A0093 0.36 +0.0 107,509 - Rru_A0093 0.36 +1.1 107,509 - Rru_A0093 0.36 +0.9 107,509 - Rru_A0093 0.36 +0.7 107,509 - Rru_A0093 0.36 +0.7 107,509 - Rru_A0093 0.36 +0.5 107,509 - Rru_A0093 0.36 +0.8 107,588 + Rru_A0093 0.45 +1.0 107,588 + Rru_A0093 0.45 +1.1 107,588 + Rru_A0093 0.45 -0.3 107,588 + Rru_A0093 0.45 -0.1 107,588 + Rru_A0093 0.45 +0.1 107,589 - Rru_A0093 0.45 +0.7 107,589 - Rru_A0093 0.45 +0.8 107,658 + Rru_A0093 0.53 +0.2 107,658 + Rru_A0093 0.53 +1.8 107,658 + Rru_A0093 0.53 +2.0 107,658 + Rru_A0093 0.53 +0.9 107,658 + Rru_A0093 0.53 +1.1 107,658 + Rru_A0093 0.53 -0.1 107,658 + Rru_A0093 0.53 +1.3 107,659 - Rru_A0093 0.53 +0.1 107,659 - Rru_A0093 0.53 -0.6 107,659 - Rru_A0093 0.53 +1.3 107,659 - Rru_A0093 0.53 +0.7 107,659 - Rru_A0093 0.53 +0.9 107,659 - Rru_A0093 0.53 +1.8 107,661 - Rru_A0093 0.53 +0.9 107,791 - Rru_A0093 0.68 -0.1 107,910 + Rru_A0093 0.82 +1.0 107,911 - Rru_A0093 0.82 -1.1 107,911 - Rru_A0093 0.82 -0.9 107,940 + Rru_A0093 0.86 +0.0 107,940 + Rru_A0093 0.86 -2.0 107,940 + Rru_A0093 0.86 -1.0 107,940 + Rru_A0093 0.86 -2.3 107,940 + Rru_A0093 0.86 +0.3 107,940 + Rru_A0093 0.86 +1.4 107,940 + Rru_A0093 0.86 -0.2 107,941 - Rru_A0093 0.86 +1.1 107,941 - Rru_A0093 0.86 +0.5 107,941 - Rru_A0093 0.86 +1.2 108,030 + +1.2 108,030 + +0.9 108,036 + +0.3 108,036 + -2.1 108,076 + -0.0 108,076 + +0.6 108,077 - +1.1 108,077 - -0.7
Or see this region's nucleotide sequence