Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0092

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0090 and Rru_A0091 are separated by 3 nucleotidesRru_A0091 and Rru_A0092 are separated by 375 nucleotidesRru_A0092 and Rru_A0093 are separated by 45 nucleotidesRru_A0093 and Rru_A0094 overlap by 4 nucleotides Rru_A0090: Rru_A0090 - Prevent-host-death protein (NCBI), at 104,817 to 105,059 _A0090 Rru_A0091: Rru_A0091 - PilT protein-like (NCBI), at 105,063 to 105,497 _A0091 Rru_A0092: Rru_A0092 - extracellular solute-binding protein, family 1 (NCBI), at 105,873 to 107,150 _A0092 Rru_A0093: Rru_A0093 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 107,196 to 108,065 _A0093 Rru_A0094: Rru_A0094 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 108,062 to 109,000 _A0094 Position (kb) 105 106 107 108Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 105.066 kb on + strandat 105.066 kb on + strandat 105.066 kb on + strandat 105.067 kb on - strandat 105.067 kb on - strandat 105.067 kb on - strandat 105.067 kb on - strandat 105.067 kb on - strandat 105.067 kb on - strandat 105.279 kb on + strand, within Rru_A0091at 105.280 kb on - strand, within Rru_A0091at 105.280 kb on - strand, within Rru_A0091at 105.592 kb on + strandat 105.593 kb on - strandat 105.593 kb on - strandat 105.594 kb on + strandat 105.595 kb on - strandat 105.688 kb on + strandat 105.688 kb on + strandat 105.688 kb on + strandat 105.689 kb on - strandat 105.767 kb on - strandat 106.284 kb on + strand, within Rru_A0092at 106.284 kb on + strand, within Rru_A0092at 106.285 kb on - strand, within Rru_A0092at 106.285 kb on - strand, within Rru_A0092at 106.296 kb on + strand, within Rru_A0092at 106.296 kb on + strand, within Rru_A0092at 106.296 kb on + strand, within Rru_A0092at 106.296 kb on + strand, within Rru_A0092at 106.296 kb on + strand, within Rru_A0092at 106.297 kb on - strand, within Rru_A0092at 106.297 kb on - strand, within Rru_A0092at 106.297 kb on - strand, within Rru_A0092at 106.297 kb on - strand, within Rru_A0092at 106.316 kb on + strand, within Rru_A0092at 106.317 kb on - strand, within Rru_A0092at 106.403 kb on + strand, within Rru_A0092at 106.521 kb on + strand, within Rru_A0092at 106.521 kb on + strand, within Rru_A0092at 107.269 kb on - strandat 107.292 kb on + strand, within Rru_A0093at 107.328 kb on + strand, within Rru_A0093at 107.328 kb on + strand, within Rru_A0093at 107.328 kb on + strand, within Rru_A0093at 107.353 kb on - strand, within Rru_A0093at 107.353 kb on - strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.508 kb on + strand, within Rru_A0093at 107.509 kb on + strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.509 kb on - strand, within Rru_A0093at 107.588 kb on + strand, within Rru_A0093at 107.588 kb on + strand, within Rru_A0093at 107.588 kb on + strand, within Rru_A0093at 107.588 kb on + strand, within Rru_A0093at 107.588 kb on + strand, within Rru_A0093at 107.589 kb on - strand, within Rru_A0093at 107.589 kb on - strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.658 kb on + strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.659 kb on - strand, within Rru_A0093at 107.661 kb on - strand, within Rru_A0093at 107.791 kb on - strand, within Rru_A0093at 107.910 kb on + strand, within Rru_A0093at 107.911 kb on - strand, within Rru_A0093at 107.911 kb on - strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.940 kb on + strand, within Rru_A0093at 107.941 kb on - strand, within Rru_A0093at 107.941 kb on - strand, within Rru_A0093at 107.941 kb on - strand, within Rru_A0093at 108.030 kb on + strandat 108.030 kb on + strandat 108.036 kb on + strandat 108.036 kb on + strandat 108.076 kb on + strandat 108.076 kb on + strandat 108.077 kb on - strandat 108.077 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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105,066 + -1.4
105,066 + +2.2
105,066 + +0.2
105,067 - -0.7
105,067 - +0.5
105,067 - +0.2
105,067 - -0.8
105,067 - +0.1
105,067 - -2.5
105,279 + Rru_A0091 0.50 +0.2
105,280 - Rru_A0091 0.50 -1.3
105,280 - Rru_A0091 0.50 +0.2
105,592 + -0.5
105,593 - +0.2
105,593 - -0.1
105,594 + +0.5
105,595 - -0.1
105,688 + -0.8
105,688 + -0.0
105,688 + -1.5
105,689 - +0.4
105,767 - +0.6
106,284 + Rru_A0092 0.32 +1.0
106,284 + Rru_A0092 0.32 +0.1
106,285 - Rru_A0092 0.32 +0.8
106,285 - Rru_A0092 0.32 +0.9
106,296 + Rru_A0092 0.33 +0.3
106,296 + Rru_A0092 0.33 +2.0
106,296 + Rru_A0092 0.33 +0.3
106,296 + Rru_A0092 0.33 +0.1
106,296 + Rru_A0092 0.33 +0.3
106,297 - Rru_A0092 0.33 +0.6
106,297 - Rru_A0092 0.33 +2.5
106,297 - Rru_A0092 0.33 +0.4
106,297 - Rru_A0092 0.33 -0.1
106,316 + Rru_A0092 0.35 +2.0
106,317 - Rru_A0092 0.35 +2.2
106,403 + Rru_A0092 0.41 +0.0
106,521 + Rru_A0092 0.51 +0.7
106,521 + Rru_A0092 0.51 +0.9
107,269 - +0.1
107,292 + Rru_A0093 0.11 -4.0
107,328 + Rru_A0093 0.15 -0.9
107,328 + Rru_A0093 0.15 +0.2
107,328 + Rru_A0093 0.15 +0.6
107,353 - Rru_A0093 0.18 -0.0
107,353 - Rru_A0093 0.18 -1.4
107,508 + Rru_A0093 0.36 +0.9
107,508 + Rru_A0093 0.36 +1.1
107,508 + Rru_A0093 0.36 -1.7
107,508 + Rru_A0093 0.36 +0.5
107,508 + Rru_A0093 0.36 +3.2
107,508 + Rru_A0093 0.36 -1.9
107,508 + Rru_A0093 0.36 -1.2
107,508 + Rru_A0093 0.36 +0.5
107,508 + Rru_A0093 0.36 +1.7
107,508 + Rru_A0093 0.36 +1.8
107,509 + Rru_A0093 0.36 +2.1
107,509 - Rru_A0093 0.36 +2.1
107,509 - Rru_A0093 0.36 +0.6
107,509 - Rru_A0093 0.36 -1.3
107,509 - Rru_A0093 0.36 +0.2
107,509 - Rru_A0093 0.36 +0.8
107,509 - Rru_A0093 0.36 +0.0
107,509 - Rru_A0093 0.36 +1.1
107,509 - Rru_A0093 0.36 +0.9
107,509 - Rru_A0093 0.36 +0.7
107,509 - Rru_A0093 0.36 +0.7
107,509 - Rru_A0093 0.36 +0.5
107,509 - Rru_A0093 0.36 +0.8
107,588 + Rru_A0093 0.45 +1.0
107,588 + Rru_A0093 0.45 +1.1
107,588 + Rru_A0093 0.45 -0.3
107,588 + Rru_A0093 0.45 -0.1
107,588 + Rru_A0093 0.45 +0.1
107,589 - Rru_A0093 0.45 +0.7
107,589 - Rru_A0093 0.45 +0.8
107,658 + Rru_A0093 0.53 +0.2
107,658 + Rru_A0093 0.53 +1.8
107,658 + Rru_A0093 0.53 +2.0
107,658 + Rru_A0093 0.53 +0.9
107,658 + Rru_A0093 0.53 +1.1
107,658 + Rru_A0093 0.53 -0.1
107,658 + Rru_A0093 0.53 +1.3
107,659 - Rru_A0093 0.53 +0.1
107,659 - Rru_A0093 0.53 -0.6
107,659 - Rru_A0093 0.53 +1.3
107,659 - Rru_A0093 0.53 +0.7
107,659 - Rru_A0093 0.53 +0.9
107,659 - Rru_A0093 0.53 +1.8
107,661 - Rru_A0093 0.53 +0.9
107,791 - Rru_A0093 0.68 -0.1
107,910 + Rru_A0093 0.82 +1.0
107,911 - Rru_A0093 0.82 -1.1
107,911 - Rru_A0093 0.82 -0.9
107,940 + Rru_A0093 0.86 +0.0
107,940 + Rru_A0093 0.86 -2.0
107,940 + Rru_A0093 0.86 -1.0
107,940 + Rru_A0093 0.86 -2.3
107,940 + Rru_A0093 0.86 +0.3
107,940 + Rru_A0093 0.86 +1.4
107,940 + Rru_A0093 0.86 -0.2
107,941 - Rru_A0093 0.86 +1.1
107,941 - Rru_A0093 0.86 +0.5
107,941 - Rru_A0093 0.86 +1.2
108,030 + +1.2
108,030 + +0.9
108,036 + +0.3
108,036 + -2.1
108,076 + -0.0
108,076 + +0.6
108,077 - +1.1
108,077 - -0.7

Or see this region's nucleotide sequence